7YFF

Structure of GluN1a-GluN2D NMDA receptor in complex with agonist glycine and competitive antagonist CPP.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe7yffA2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7yffA5 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7yffA3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7yffC4 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7yffC3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7yffC2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yffB1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yffB3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yffB5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7yffD2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7yffD4 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7yffD3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, C
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding region- Family
B, D
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Glutamate receptor ionotropic, NMDA 1
B, D
Glutamate receptor ionotropic, NMDA 2D

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C
IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
A, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, C
IPR001828Receptor, ligand binding regionDomain
A, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, C
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
A, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR015683Ionotropic glutamate receptorFamily
A, C
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain
B, D
IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
B, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
B, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
B, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B, D
IPR015683Ionotropic glutamate receptorFamily
B, D
IPR001508Ionotropic glutamate receptor, metazoaFamily
B, D
IPR001828Receptor, ligand binding regionDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, C
Pharos:  Q05586
B, D
Pharos:  O15399

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C, D
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluN1a/GluN2D NMDA receptor with bound glycine and glutamate