Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J | Asparaginase_2 | e7xtgJ1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| F | Asparaginase_2 | e7xtgF1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| B | SGBP_N | e7xtgB1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: SGBP_N | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E, I, L [auth Z] | PF03613 | PTS system mannose/fructose/sorbose family IID component (EIID-AGA) | PTS system mannose/fructose/sorbose family IID component | - | Family |
| D, H, K [auth Y] | PF03609 | PTS system sorbose-specific iic component (EII-Sor) | PTS system sorbose-specific iic component | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| E, I, L [auth Z] | Mannose permease IID component | - | ||
| D, H, K [auth Y] | Mannose permease IIC component | - | ||
| Sakacin-A immunity factor | - | - | - | |
| Bacteriocin curvacin-A | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| E, I, L [auth Z] | IPR050303 | GatZ/KbaZ carbohydrate metabolism | Family |
| E, I, L [auth Z] | IPR004704 | Phosphotransferase system, mannose/fructose/sorbose family IID component | Family |
| D, H, K [auth Y] | IPR050303 | GatZ/KbaZ carbohydrate metabolism | Family |
| D, H, K [auth Y] | IPR004700 | Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit | Family |
| IPR002633 | Bacteriocin, class IIa | Family | |
| IPR023388 | Bacteriocin class IIa domain superfamily | Homologous Superfamily | |
| IPR023384 | Bacteriocin, class IIa, conserved site | Conserved Site | |
| IPR010133 | Bacteriocin-type signal sequence | Conserved Site |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |