Annotations: 7X5M

Tir-dsDNA complex, the initial binding state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth F]	PhnJ	e7x5mF1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.2)
C [auth B]	PhnJ	e7x5mB1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth B], D [auth F]	Flax rust resistance protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding ADP binding purine nucleotide binding anion binding adenyl nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding ADP binding purine nucleotide binding anion binding adenyl nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding double-stranded DNA binding nucleic acid binding cyclic nucleotide binding cAMP binding RNA binding double-stranded RNA binding hydrolase activity catalytic activity	pyridine nucleotide catabolic process catabolic process organophosphate catabolic process nucleoside phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyridine nucleotide catabolic process catabolic process organophosphate catabolic process nucleoside phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process purine nucleotide catabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process NADP+ metabolic process nucleobase-containing compound catabolic process purine-containing compound metabolic process organophosphate metabolic process NADP+ catabolic process metabolic process cellular process pyridine-containing compound catabolic process RNA metabolic process nucleic acid metabolic process macromolecule catabolic process nucleic acid catabolic process macromolecule metabolic process RNA catabolic process DNA metabolic process DNA catabolic process regulation of biological process positive regulation of programmed cell death regulation of cellular process induction of programmed cell death biological regulation positive regulation of biological process regulation of programmed cell death cell death programmed cell death positive regulation of cellular process ribose phosphate metabolic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process cAMP biosynthetic process cyclic nucleotide metabolic process ribonucleotide biosynthetic process ribonucleotide metabolic process purine-containing compound biosynthetic process cyclic nucleotide biosynthetic process ribose phosphate biosynthetic process carbohydrate derivative biosynthetic process cAMP metabolic process cyclic purine nucleotide metabolic process nucleobase-containing compound biosynthetic process biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process NAD+ catabolic process NAD+ metabolic process cGMP metabolic process cGMP biosynthetic process cellular response to stimulus response to stimulus signaling signal transduction cell communication defense response response to stress	-
B [auth E]	DNA (5'-D(PAPTPTPTP*A)-3')	-	-	-
A [auth C]	DNA (5'-D(PAPTPTPAP*A)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth B], D [auth F]	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
C [auth B], D [auth F]	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
C [auth B], D [auth F]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
C [auth B], D [auth F]	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
C [auth B], D [auth F]	IPR058192	Disease resistance protein Roq1-like, winged-helix domain	Domain
C [auth B], D [auth F]	IPR044974	Disease resistance protein, plants	Family
C [auth B], D [auth F]	IPR002182	NB-ARC	Domain
C [auth B], D [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7X5M | pdb_00007x5m

Tir-dsDNA complex, the initial binding state

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage