7X46
Cryo-EM structure of Coxsackievirus B1 A-particle in complex with nAb 2E6 (classified from CVB1 mature virion in complex with 8A10 and 2E6)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | PF07686 | e7x46L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth H] | PF07686 | e7x46H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth A] | PF00073 | e7x46A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00073 | ECOD (1.6) |
D [auth B] | PF00073 | e7x46B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00073 | ECOD (1.6) |
E [auth C] | PF00073 | e7x46C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00073 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L] | Light Chain | IGKV12 | Kappa | vp2 | SAbDab (2024-06-21) |
B [auth H] | Heavy Chain | IGHV2 | - | vp2 | SAbDab (2024-06-21) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth B] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
E [auth C] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
C [auth A] | IPR003138 | Picornavirus coat protein VP4 | Family |
C [auth A] | IPR001676 | Picornavirus capsid | Domain |
C [auth A] | IPR033703 | Picornavirus/Calicivirus coat protein | Domain |
C [auth A] | IPR036988 | Picornavirus coat protein VP4 superfamily | Homologous Superfamily |
D [auth B] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
D [auth B] | IPR003138 | Picornavirus coat protein VP4 | Family |
D [auth B] | IPR001676 | Picornavirus capsid | Domain |
D [auth B] | IPR033703 | Picornavirus/Calicivirus coat protein | Domain |
D [auth B] | IPR036988 | Picornavirus coat protein VP4 superfamily | Homologous Superfamily |
E [auth C] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
E [auth C] | IPR003138 | Picornavirus coat protein VP4 | Family |
E [auth C] | IPR001676 | Picornavirus capsid | Domain |
E [auth C] | IPR033703 | Picornavirus/Calicivirus coat protein | Domain |
E [auth C] | IPR036988 | Picornavirus coat protein VP4 superfamily | Homologous Superfamily |