7WN6
Cryo-EM structure of VWF D'D3 dimer (R1136M/E1143M mutant) complexed with D1D2 at 3.29 angstron resolution (2 units)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00094 | e7wn6A2 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
A | PF01826 | e7wn6A6 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
A | PF08742 | e7wn6A5 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
C [auth B] | PF00094 | e7wn6B2 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
C [auth B] | PF01826 | e7wn6B6 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
C [auth B] | PF08742 | e7wn6B5 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
E | PF00094 | e7wn6E2 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
E | PF01826 | e7wn6E6 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
E | PF08742 | e7wn6E5 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
F [auth G] | PF00094 | e7wn6G2 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
F [auth G] | PF01826 | e7wn6G6 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
F [auth G] | PF08742 | e7wn6G5 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
B [auth F] | PF00094 | e7wn6F4 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
B [auth F] | PF01826 | e7wn6F2 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
B [auth F] | PF00093 | e7wn6F6 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF00093 | ECOD (1.6) |
B [auth F] | PF16164 | e7wn6F1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF16164 | ECOD (1.6) |
B [auth F] | PF08742 | e7wn6F3 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
D [auth H] | PF00094 | e7wn6H2 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
D [auth H] | PF01826 | e7wn6H6 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
D [auth H] | PF00093 | e7wn6H3 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF00093 | ECOD (1.6) |
D [auth H] | PF16164 | e7wn6H5 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF16164 | ECOD (1.6) |
D [auth H] | PF08742 | e7wn6H4 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
G [auth C] | PF00094 | e7wn6C2 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
G [auth C] | PF01826 | e7wn6C1 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
G [auth C] | PF00093 | e7wn6C3 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF00093 | ECOD (1.6) |
G [auth C] | PF16164 | e7wn6C5 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF16164 | ECOD (1.6) |
G [auth C] | PF08742 | e7wn6C4 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
H [auth D] | PF00094 | e7wn6D3 | A: beta barrels | X: Repulsive guidance molecule (RGM) family (From Topology) | H: Repulsive guidance molecule (RGM) family (From Topology) | T: Repulsive guidance molecule (RGM) family | F: PF00094 | ECOD (1.6) |
H [auth D] | PF01826 | e7wn6D2 | A: few secondary structure elements | X: EGF-like | H: Serine protease inhibitors (From Topology) | T: Serine protease inhibitors | F: PF01826 | ECOD (1.6) |
H [auth D] | PF00093 | e7wn6D4 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF00093 | ECOD (1.6) |
H [auth D] | PF16164 | e7wn6D5 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: PF16164 | ECOD (1.6) |
H [auth D] | PF08742 | e7wn6D1 | A: few secondary structure elements | X: VWF C8-3 module (From Topology) | H: VWF C8-3 module (From Topology) | T: VWF C8-3 module | F: PF08742 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E, F [auth G] | PF08742 | C8 domain (C8) | C8 domain | This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often fo ... | Domain |
A, C [auth B], E, F [auth G] | PF01826 | Trypsin Inhibitor like cysteine rich domain (TIL) | Trypsin Inhibitor like cysteine rich domain | This family contains trypsin inhibitors as well as a domain found in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, ... | Domain |
A, C [auth B], E, F [auth G] | PF00094 | von Willebrand factor type D domain (VWD) | von Willebrand factor type D domain | Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. This domain is structurally homologous to the C-terminal domain of repulsive guidance molecules (RGM) despite low sequence identity [2 ... | Domain |
B [auth F], D [auth H], G [auth C], H [auth D] | PF08742 | C8 domain (C8) | C8 domain | This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often fo ... | Domain |
B [auth F], D [auth H], G [auth C], H [auth D] | PF01826 | Trypsin Inhibitor like cysteine rich domain (TIL) | Trypsin Inhibitor like cysteine rich domain | This family contains trypsin inhibitors as well as a domain found in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, ... | Domain |
B [auth F], D [auth H], G [auth C], H [auth D] | PF00094 | von Willebrand factor type D domain (VWD) | von Willebrand factor type D domain | Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. This domain is structurally homologous to the C-terminal domain of repulsive guidance molecules (RGM) despite low sequence identity [2 ... | Domain |
B [auth F], D [auth H], G [auth C], H [auth D] | PF16164 | VWA N-terminal (VWA_N2) | VWA N-terminal | - | Family |