7WKK
Cryo-EM structure of the IR subunit from X. laevis NPC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L [auth K] | SCOP2B Superfamily | Nup58-like | 8053258 | 3002169 | SCOP2B (2022-06-29) |
Y [auth k] | SCOP2B Superfamily | Nup58-like | 8053258 | 3002169 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Nup58-like | 8053258 | 3002169 | SCOP2B (2022-06-29) |
V [auth i] | SCOP2B Superfamily | Nup58-like | 8053258 | 3002169 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | Nucleoporin_N | e7wkkD3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
D | Nucleoporin_C_C | e7wkkD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
D | Nucleoporin_C_N | e7wkkD2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
F | Nucleoporin_N | e7wkkF2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
F | Nucleoporin_C_C,Nucleoporin_C_N | e7wkkF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C,Nucleoporin_C_N | ECOD (1.6) |
Q [auth d] | Nucleoporin_N | e7wkkd2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
Q [auth d] | Nucleoporin_C_C | e7wkkd1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C | ECOD (1.6) |
Q [auth d] | Nucleoporin_C_N | e7wkkd3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_N | ECOD (1.6) |
S [auth f] | Nucleoporin_N | e7wkkf2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nucleoporin_N | ECOD (1.6) |
S [auth f] | Nucleoporin_C_C,Nucleoporin_C_N | e7wkkf1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: Nucleoporin_C_C,Nucleoporin_C_N | ECOD (1.6) |
AA [auth O] | ANAPC4_WD40_1 | e7wkkO1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: ANAPC4_WD40_1 | ECOD (1.6) |
CA [auth o] | ANAPC4_WD40_1 | e7wkko1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: ANAPC4_WD40_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, N [auth a] | PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192) | Nuclear pore complex scaffold, nucleoporins 186/192/205 | - | Repeat |
B, O [auth b] | PF10487 | Nucleoporin Nup188, N-terminal (Nup188_N) | Nucleoporin Nup188, N-terminal | - | Repeat |
B, O [auth b] | PF21093 | Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III) | Nucleoporin Nup188, N-terminal subdomain III | - | Repeat |
B, O [auth b] | PF21094 | Nup188 SH3-like domain (Nup188_SH3-like) | Nup188 SH3-like domain | Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically loca ... | Domain |
C, E, P [auth c], R [auth e] | PF04097 | Nup93/Nic96 (Nic96) | Nup93/Nic96 | - | Repeat |
PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Repeat | |
PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat | |
G, J, T [auth g], W [auth j] | PF13874 | Nucleoporin complex subunit 54 (Nup54) | Nucleoporin complex subunit 54 | This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ... | Domain |
AA [auth O], CA [auth o] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
BA [auth N], DA [auth n] | PF09531 | Nucleoporin protein Ndc1-Nup (Ndc1_Nup) | Nucleoporin protein Ndc1-Nup | - | Family |