7VFL

Crystal structure of SdgB (UDP, NAG, and O-glycosylated SD peptide-binding form)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ring_hydroxyl_B	e7vflA3	A: beta meanders	X: O-GlcNAc transferase GtfA beta-meander domain (From Topology)	H: O-GlcNAc transferase GtfA beta-meander domain (From Topology)	T: O-GlcNAc transferase GtfA beta-meander domain	F: Ring_hydroxyl_B	ECOD (1.6)
A	Glycos_transf_1	e7vflA2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Glycos_transf_1	ECOD (1.6)
A	TIGR02918_1st	e7vflA1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: TIGR02918_1st	ECOD (1.6)
B [auth C]	Ring_hydroxyl_B	e7vflC3	A: beta meanders	X: O-GlcNAc transferase GtfA beta-meander domain (From Topology)	H: O-GlcNAc transferase GtfA beta-meander domain (From Topology)	T: O-GlcNAc transferase GtfA beta-meander domain	F: Ring_hydroxyl_B	ECOD (1.6)
B [auth C]	Glycos_transf_1	e7vflC2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Glycos_transf_1	ECOD (1.6)
B [auth C]	TIGR02918_1st	e7vflC1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: TIGR02918_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C]	PF00534	Glycosyl transferases group 1 (Glycos_transf_1)	Glycosyl transferases group 1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C]	Glycosyl transferase, group 1 family protein	glycosyltransferase activity transferase activity catalytic activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding	-	intracellular anatomical structure cytoplasm cellular anatomical entity
C [auth D], D [auth G]	SER-ASP-SER-ASP-SER-ASP-SER-ASP	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C]	IPR001296	Glycosyl transferase, family 1	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.