7VCI

Structure of Xenopus laevis NPC nuclear ring asymmetric unit


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07575e7vciA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
JPF07575e7vciJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF07575ECOD (1.6)
CPF00400e7vciC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
LPF00400e7vciL1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
EPF00400e7vciE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
NPF00400e7vciN1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
FPF12110e7vciF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
OPF12110e7vciO1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: PF12110ECOD (1.6)
GPF00400e7vciG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
PPF00400e7vciP1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
IPF08801e7vciI2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
IPF03177e7vciI1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: PF03177ECOD (1.6)
RPF08801e7vciR2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF08801ECOD (1.6)
RPF03177e7vciR1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: PF03177ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, J
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Family
B, K
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C, L
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E, N
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
F, O
PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
G, P
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H, Q
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
I, R
PF08801Nup133 N terminal like (Nucleoporin_N)Nup133 N terminal like- Repeat
PF11894Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)Nuclear pore complex scaffold, nucleoporins 186/192/205- Repeat
PF13934Nuclear pore complex assembly (ELYS)Nuclear pore complex assembly- Family
PF16687beta-propeller of ELYS nucleoporin (ELYS-bb)beta-propeller of ELYS nucleoporin- Repeat
PF04097Nup93/Nic96 (Nic96)Nup93/Nic96- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, J
Nuclear pore complex protein Nup85
B, K
MGC154553 protein- -
C, L
Nucleoporin SEH1-A
D, M
Nup160---
E, N
MGC83926 protein- -
F, O
Nuclear pore complex protein Nup96
G, P
GATOR complex protein SEC13
H, Q
Nuclear pore complex protein
I, R
outer Nup133
MGC83295 protein
Protein ELYS
Nuclear pore complex protein Nup93

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, J
IPR011502Nucleoporin Nup85-likeFamily
B, K
IPR001680WD40 repeatRepeat
B, K
IPR019775WD40 repeat, conserved siteConserved Site
B, K
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B, K
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C, L
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C, L
IPR037363Sec13/Seh1 familyFamily
C, L
IPR001680WD40 repeatRepeat
C, L
IPR020472G-protein beta WD-40 repeatRepeat
C, L
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E, N
IPR037626Nucleoporin Nup37Family
E, N
IPR001680WD40 repeatRepeat
E, N
IPR019775WD40 repeat, conserved siteConserved Site
E, N
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E, N
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F, O
IPR025574Nucleoporin FG repeatRepeat
F, O
IPR037665Nucleoporin peptidase S59-likeFamily
F, O
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
F, O
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
F, O
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
G, P
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G, P
IPR037363Sec13/Seh1 familyFamily
G, P
IPR001680WD40 repeatRepeat
G, P
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H, Q
IPR007252Nuclear pore protein 84/107Family
I, R
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
I, R
IPR037624Nuclear pore complex protein Nup133-likeFamily
I, R
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I, R
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
IPR032040ELYS, beta-propeller domainDomain
IPR025151ELYS-like domainDomain
IPR007231Nucleoporin interacting component Nup93/Nic96Family