7UZZ
Staphylococcus epidermidis RP62a CRISPR tall effector complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth J] | SCOP2B Superfamily | Type III-A Csm2-like | 8089562 | 3002163 | SCOP2B (2022-06-29) |
C [auth I] | SCOP2B Superfamily | Type III-A Csm2-like | 8089562 | 3002163 | SCOP2B (2022-06-29) |
D [auth K] | SCOP2B Superfamily | Type III-A Csm2-like | 8089562 | 3002163 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
H [auth A] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
I [auth B] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth J] | Csm2_III-A | e7uzzJ1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: Csm2_III-A | ECOD (1.6) |
C [auth I] | Csm2_III-A | e7uzzI1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: Csm2_III-A | ECOD (1.6) |
D [auth K] | Csm2_III-A | e7uzzK1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: Csm2_III-A | ECOD (1.6) |
E | RAMPs | e7uzzE1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: RAMPs | ECOD (1.6) |
F [auth D] | RAMPs | e7uzzD1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
G [auth C] | RAMPs | e7uzzC1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
H [auth A] | RAMPs | e7uzzA1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
I [auth B] | RAMPs | e7uzzB1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
J [auth H] | RAMPs_1 | e7uzzH2 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: RAMPs_1 | ECOD (1.6) |
J [auth H] | Csm4 | e7uzzH1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: Csm4 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth J], C [auth I], D [auth K] | PF03750 | Csm2 Type III-A (Csm2_III-A) | Csm2 Type III-A | - | Family |
PF03787 | RAMP superfamily (RAMPs) | RAMP superfamily | - | Family | |
F [auth D], G [auth C], H [auth A], I [auth B] | PF03787 | RAMP superfamily (RAMPs) | RAMP superfamily | - | Family |
J [auth H] | PF17953 | CRISPR Csm4 C-terminal domain (Csm4_C) | CRISPR Csm4 C-terminal domain | Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interf ... | Domain |
J [auth H] | PF03787 | RAMP superfamily (RAMPs) | RAMP superfamily | - | Family |
K [auth F] | PF22335 | Cas10/Cmr2, second palm domain (Cas10-Cmr2_palm2) | Cas10/Cmr2, second palm domain | This entry represents the second palm domain of Cas10 subunit (named Csm1 in Type III-A and Cmr2 in III-B systems) from type III CRISPR-Cas systems [6]. This domain contains a conserved GGDD motif that is important for DNA polymerase activity [1-5]. | Domain |
K [auth F] | PF01966 | HD domain (HD) | HD domain | - | Family |
K [auth F] | PF18211 | Csm1 subunit domain B (Csm1_B) | Csm1 subunit domain B | This domain is found in the Csm1 subunit of the Csm complex found in Thermococcus onnurineus. Csm is a type III-A CRISPR-Cas system, which is an RNA-guided immune defense mechanism that detects and destroys foreign DNA or RNA. This domain is known as ... | Domain |
K [auth F] | PF20824 | CRISPR RNA silencing complex Cmr2 subunit, second helical domain (Cmr2_hel_dom2) | CRISPR RNA silencing complex Cmr2 subunit, second helical domain | The prokaryotic CRISPR RNA-Cas protein (Cmr) complex provides protection against mobile genetic elements by cleaving foreign RNA. Its largest subunit is Cmr2. This protein shows a N-terminal HD (histidine-aspartate) domain, two RRM domains resembling ... | Domain |