7UMS
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 1] | PF17477 | e7ums12 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
B [auth 1] | PF17478 | e7ums11 | A: alpha complex topology | X: Helical domain in outer capsid protein VP4 (From Topology) | H: Helical domain in outer capsid protein VP4 (From Topology) | T: Helical domain in outer capsid protein VP4 | F: PF17478 | ECOD (1.6) |
D [auth 2] | PF17477 | e7ums21 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
D [auth 2] | PF17478 | e7ums22 | A: alpha complex topology | X: Helical domain in outer capsid protein VP4 (From Topology) | H: Helical domain in outer capsid protein VP4 (From Topology) | T: Helical domain in outer capsid protein VP4 | F: PF17478 | ECOD (1.6) |
F [auth 3] | PF17477 | e7ums31 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
F [auth 3] | PF17478 | e7ums32 | A: alpha complex topology | X: Helical domain in outer capsid protein VP4 (From Topology) | H: Helical domain in outer capsid protein VP4 (From Topology) | T: Helical domain in outer capsid protein VP4 | F: PF17478 | ECOD (1.6) |
G [auth 4] | PF07654 | e7ums42 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G [auth 4] | PF07686 | e7ums41 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth 6] | PF07654 | e7ums61 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
I [auth 6] | PF07686 | e7ums62 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth 5] | PF07654 | e7ums52 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H [auth 5] | PF07686 | e7ums51 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth 7] | PF07654 | e7ums72 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
J [auth 7] | PF07686 | e7ums71 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
AA [auth Q] | PF00980 | e7umsQ2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
AA [auth Q] | PF00980 | e7umsQ1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
BA [auth R] | PF00980 | e7umsR1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
BA [auth R] | PF00980 | e7umsR2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
K [auth A] | PF00980 | e7umsA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
K [auth A] | PF00980 | e7umsA2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
L [auth B] | PF00980 | e7umsB2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
L [auth B] | PF00980 | e7umsB1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
M [auth C] | PF00980 | e7umsC1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
M [auth C] | PF00980 | e7umsC2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
N [auth D] | PF00980 | e7umsD1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
N [auth D] | PF00980 | e7umsD2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
O [auth E] | PF00980 | e7umsE2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
O [auth E] | PF00980 | e7umsE1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
P [auth F] | PF00980 | e7umsF2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
P [auth F] | PF00980 | e7umsF1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
Q [auth G] | PF00980 | e7umsG2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
Q [auth G] | PF00980 | e7umsG1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
R [auth H] | PF00980 | e7umsH2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
R [auth H] | PF00980 | e7umsH1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
S [auth I] | PF00980 | e7umsI1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
S [auth I] | PF00980 | e7umsI2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
T [auth J] | PF00980 | e7umsJ1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
T [auth J] | PF00980 | e7umsJ2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
U [auth K] | PF00980 | e7umsK2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
U [auth K] | PF00980 | e7umsK1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
V [auth L] | PF00980 | e7umsL1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
V [auth L] | PF00980 | e7umsL2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
W [auth M] | PF00980 | e7umsM2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
W [auth M] | PF00980 | e7umsM1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
X [auth N] | PF00980 | e7umsN2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
X [auth N] | PF00980 | e7umsN1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
Y [auth O] | PF00980 | e7umsO1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
Y [auth O] | PF00980 | e7umsO2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
Z [auth P] | PF00980 | e7umsP2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
Z [auth P] | PF00980 | e7umsP1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
CA [auth a] | PF00434 | e7umsa2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
CA [auth a] | PF00434 | e7umsa1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
DA [auth b] | PF00434 | e7umsb2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
DA [auth b] | PF00434 | e7umsb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
EA [auth c] | PF00434 | e7umsc1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
EA [auth c] | PF00434 | e7umsc2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
FA [auth d] | PF00434 | e7umsd2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
FA [auth d] | PF00434 | e7umsd1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
GA [auth e] | PF00434 | e7umse2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
GA [auth e] | PF00434 | e7umse1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
HA [auth f] | PF00434 | e7umsf2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
HA [auth f] | PF00434 | e7umsf1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
IA [auth g] | PF00434 | e7umsg2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
IA [auth g] | PF00434 | e7umsg1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
JA [auth h] | PF00434 | e7umsh1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
JA [auth h] | PF00434 | e7umsh2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
KA [auth i] | PF00434 | e7umsi2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
KA [auth i] | PF00434 | e7umsi1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
LA [auth j] | PF00434 | e7umsj1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
LA [auth j] | PF00434 | e7umsj2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
MA [auth k] | PF00434 | e7umsk2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
MA [auth k] | PF00434 | e7umsk1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
NA [auth l] | PF00434 | e7umsl2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
NA [auth l] | PF00434 | e7umsl1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
OA [auth m] | PF00434 | e7umsm2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
OA [auth m] | PF00434 | e7umsm1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
PA [auth n] | PF00434 | e7umsn2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
PA [auth n] | PF00434 | e7umsn1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
QA [auth o] | PF00434 | e7umso1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
QA [auth o] | PF00434 | e7umso2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
RA [auth p] | PF00434 | e7umsp2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
RA [auth p] | PF00434 | e7umsp1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
SA [auth q] | PF00434 | e7umsq2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
SA [auth q] | PF00434 | e7umsq1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
TA [auth r] | PF00434 | e7umsr2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
TA [auth r] | PF00434 | e7umsr1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
G [auth 4], I [auth 6] | Heavy Chain | IGHV3 | - | outer capsid protein vp5* | outer capsid protein vp8* | SAbDab (2024-06-07) |
H [auth 5], J [auth 7] | Light Chain | IGLV6 | Lambda | outer capsid protein vp5* | outer capsid protein vp8* | SAbDab (2024-06-07) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth T], C [auth U], E [auth V] | PF00426 | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut) | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain | This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. | Domain |
B [auth 1], D [auth 2], F [auth 3] | PF17477 | Rotavirus VP4 membrane interaction domain (Rota_VP4_MID) | Rotavirus VP4 membrane interaction domain | This entry represents the VP4 membrane interaction domain. | Domain |
B [auth 1], D [auth 2], F [auth 3] | PF17478 | Rotavirus VP4 helical domain (VP4_helical) | Rotavirus VP4 helical domain | - | Domain |
PF00980 | Rotavirus major capsid protein VP6 (Rota_Capsid_VP6) | Rotavirus major capsid protein VP6 | - | Family | |