7UMH | pdb_00007umh

Energetic robustness to large scale structural dynamics in a photosynthetic supercomplex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth b]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
USCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
SSCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
QSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
MSCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
VSCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth b]Ferritine7umhb1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
GFerritine7umhG1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
BFerritine7umhB1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
CFerritine7umhC1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
NFerritine7umhN1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
CA [auth c]Ferritine7umhc1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
UFerritine7umhU1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
LA [auth l]Ferritine7umhl1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
LFerritine7umhL1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
KFerritine7umhK1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
KA [auth k]Ferritine7umhk1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
TFerritine7umhT1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
JFerritine7umhJ1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
SFerritine7umhS1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
JA [auth j]Ferritine7umhj1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
IFerritine7umhI1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
IA [auth i]Ferritine7umhi1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
RFerritine7umhR1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
FFerritine7umhF1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
FA [auth f]Ferritine7umhf1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
QFerritine7umhQ1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
EFerritine7umhE1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
OFerritine7umhO1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
EA [auth e]Ferritine7umhe1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
PFerritine7umhP1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
DA [auth d]Ferritine7umhd1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
DFerritine7umhD1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
GA [auth g]Ferritine7umhg1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
OA [auth o]Ferritine7umho1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
QA [auth q]Ferritine7umhq1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
RA [auth r]Ferritine7umhr1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
SA [auth s]Ferritine7umhs1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
TA [auth t]Ferritine7umht1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
UA [auth u]Ferritine7umhu1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
WA [auth w]Ferritine7umhw1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
XFerritine7umhX1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
YFerritine7umhY1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
YA [auth y]Ferritine7umhy1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
ZFerritine7umhZ1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
XA [auth x]Ferritine7umhx1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
WFerritine7umhW1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
VA [auth v]Ferritine7umhv1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
PA [auth p]Ferritine7umhp1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
NA [auth n]Ferritine7umhn1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
HA [auth h]Ferritine7umhh1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
MFerritine7umhM1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
MA [auth m]Ferritine7umhm1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
VFerritine7umhV1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
AFerritine7umhA1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
AA [auth a]Ferritine7umha1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)
HFerritine7umhH1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FerritinECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
BA [auth b],
G
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
B,
BA [auth b],
G
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
C,
CA [auth c],
N
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
C,
CA [auth c],
N
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
L,
LA [auth l],
U
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
L,
LA [auth l],
U
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
K,
KA [auth k],
T
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
K,
KA [auth k],
T
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
J,
JA [auth j],
S
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
J,
JA [auth j],
S
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
I,
IA [auth i],
R
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
I,
IA [auth i],
R
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
F,
FA [auth f],
Q
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
F,
FA [auth f],
Q
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
E,
EA [auth e],
O
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
E,
EA [auth e],
O
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
DA [auth d],
P
PF02531PsaD (PsaD)PsaD- Family
D,
DA [auth d],
P
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
M,
MA [auth m],
V
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
M,
MA [auth m],
V
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
A,
AA [auth a],
H
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
A,
AA [auth a],
H
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B,
BA [auth b],
G
Photosystem I P700 chlorophyll a apoprotein A2
C,
CA [auth c],
N
Photosystem I iron-sulfur center
L,
LA [auth l],
U
Photosystem I reaction center subunit XI-
K,
KA [auth k],
T
Photosystem I reaction center subunit PsaK 1-
J,
JA [auth j],
S
Photosystem I reaction center subunit IX-
I,
IA [auth i],
R
Photosystem I reaction center subunit VIII-
F,
FA [auth f],
Q
Photosystem I reaction center subunit III-
E,
EA [auth e],
O
Photosystem I reaction center subunit IV-
D,
DA [auth d],
P
Photosystem I reaction center subunit II-
Iron stress-induced chlorophyll-binding protein
M,
MA [auth m],
V
Photosystem I reaction center subunit XII-
A,
AA [auth a],
H
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
BA [auth b],
G
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B,
BA [auth b],
G
IPR001280Photosystem I PsaA/PsaBFamily
B,
BA [auth b],
G
IPR006244Photosystem I PsaBFamily
B,
BA [auth b],
G
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
C,
CA [auth c],
N
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C,
CA [auth c],
N
IPR050157Photosystem I iron-sulfur centerFamily
C,
CA [auth c],
N
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C,
CA [auth c],
N
IPR017491Photosystem I protein PsaCFamily
L,
LA [auth l],
U
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
L,
LA [auth l],
U
IPR022980Photosystem I, reaction centre subunit XIFamily
L,
LA [auth l],
U
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
K,
KA [auth k],
T
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
K,
KA [auth k],
T
IPR000549Photosystem I reaction center subunit V/PsaKFamily
K,
KA [auth k],
T
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
K,
KA [auth k],
T
IPR017492Photosystem I reaction center subunit PsaKFamily
J,
JA [auth j],
S
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
J,
JA [auth j],
S
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
I,
IA [auth i],
R
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
I,
IA [auth i],
R
IPR001302Photosystem I reaction centre subunit VIIIFamily
F,
FA [auth f],
Q
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F,
FA [auth f],
Q
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
E,
EA [auth e],
O
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E,
EA [auth e],
O
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
D,
DA [auth d],
P
IPR003685Photosystem I PsaDFamily
D,
DA [auth d],
P
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
M,
MA [auth m],
V
IPR010010Photosystem I PsaM, reaction centreFamily
M,
MA [auth m],
V
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
A,
AA [auth a],
H
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A,
AA [auth a],
H
IPR001280Photosystem I PsaA/PsaBFamily
A,
AA [auth a],
H
IPR006243Photosystem I PsaAFamily
A,
AA [auth a],
H
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site