7UMH
Energetic robustness to large scale structural dynamics in a photosynthetic supercomplex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
AA [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
LA [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
MA [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
BA [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
DA [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
EA [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
FA [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
IA [auth i] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
JA [auth j] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00223 | e7umhA2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
A | PF00223 | e7umhA1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
AA [auth a] | PF00223 | e7umha1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
AA [auth a] | PF00223 | e7umha2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
H | PF00223 | e7umhH2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
H | PF00223 | e7umhH1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
L | PF02605 | e7umhL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
LA [auth l] | PF02605 | e7umhl1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
U | PF02605 | e7umhU1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
M | PF07465 | e7umhM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
MA [auth m] | PF07465 | e7umhm1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
V | PF07465 | e7umhV1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
GA [auth g] | PF00421 | e7umhg1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
HA [auth h] | PF00421 | e7umhh1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
NA [auth n] | PF00421 | e7umhn1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
OA [auth o] | PF00421 | e7umho1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
PA [auth p] | PF00421 | e7umhp1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
QA [auth q] | PF00421 | e7umhq1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
RA [auth r] | PF00421 | e7umhr1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
SA [auth s] | PF00421 | e7umhs1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
TA [auth t] | PF00421 | e7umht1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
UA [auth u] | PF00421 | e7umhu1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
VA [auth v] | PF00421 | e7umhv1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
W | PF00421 | e7umhW1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
WA [auth w] | PF00421 | e7umhw1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
X | PF00421 | e7umhX1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
XA [auth x] | PF00421 | e7umhx1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
Y | PF00421 | e7umhY1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
YA [auth y] | PF00421 | e7umhy1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
Z | PF00421 | e7umhZ1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
B | PF00223 | e7umhB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
B | PF00223 | e7umhB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
BA [auth b] | PF00223 | e7umhb1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
BA [auth b] | PF00223 | e7umhb2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
G | PF00223 | e7umhG1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
G | PF00223 | e7umhG2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
C | PF00037 | e7umhC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
CA [auth c] | PF00037 | e7umhc1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
N | PF00037 | e7umhN1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
D | PF02531 | e7umhD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
DA [auth d] | PF02531 | e7umhd1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
P | PF02531 | e7umhP1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
E | PF02427 | e7umhE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
EA [auth e] | PF02427 | e7umhe1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
O | PF02427 | e7umhO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
F | PF02507 | e7umhF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
FA [auth f] | PF02507 | e7umhf1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
Q | PF02507 | e7umhQ1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
I | PF00796 | e7umhI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
IA [auth i] | PF00796 | e7umhi1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
R | PF00796 | e7umhR1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
J | PF01701 | e7umhJ1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
JA [auth j] | PF01701 | e7umhj1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
S | PF01701 | e7umhS1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
K | PF01241 | e7umhK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
KA [auth k] | PF01241 | e7umhk1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
T | PF01241 | e7umhT1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, AA [auth a], H | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
A, AA [auth a], H | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
L, LA [auth l], U | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
L, LA [auth l], U | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
M, MA [auth m], V | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
M, MA [auth m], V | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family | |
B, BA [auth b], G | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
B, BA [auth b], G | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
C, CA [auth c], N | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
C, CA [auth c], N | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
D, DA [auth d], P | PF02531 | PsaD (PsaD) | PsaD | - | Family |
D, DA [auth d], P | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
E, EA [auth e], O | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
E, EA [auth e], O | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
F, FA [auth f], Q | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
F, FA [auth f], Q | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
I, IA [auth i], R | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
I, IA [auth i], R | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
J, JA [auth j], S | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
J, JA [auth j], S | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
K, KA [auth k], T | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
K, KA [auth k], T | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |