7UIO
Mediator-PIC Early (Composite Model)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I [auth GA] | SCOP2B Superfamily | Leucine zipper-like | 8040227 | 3001609 | SCOP2B (2021-05-27) |
I [auth GA] | SCOP2B Superfamily | Zn2/Cys6 DNA-binding domain | 8040225 | 3001104 | SCOP2B (2021-05-27) |
J [auth GB] | SCOP2B Superfamily | Leucine zipper-like | 8040227 | 3001609 | SCOP2B (2021-05-27) |
J [auth GB] | SCOP2B Superfamily | Zn2/Cys6 DNA-binding domain | 8040225 | 3001104 | SCOP2B (2021-05-27) |
WA [auth Bt] | SCOP2B Superfamily | CYTH-like phosphatases | 8091513 | 3001426 | SCOP2B (2021-05-27) |
K [auth At] | SCOP2B Superfamily | CYTH-like phosphatases | 8091513 | 3001426 | SCOP2B (2021-05-27) |
L [auth Ag] | SCOP2B Superfamily | Mediator subcomplex-like | 8034652 | 3001613 | SCOP2B (2021-05-27) |
XA [auth Bg] | SCOP2B Superfamily | Mediator subcomplex-like | 8034652 | 3001613 | SCOP2B (2021-05-27) |
P [auth Ak] | SCOP2B Superfamily | Mediator subcomplex-like | 8051777 | 3001613 | SCOP2B (2021-05-27) |
BB [auth Bk] | SCOP2B Superfamily | Mediator subcomplex-like | 8051777 | 3001613 | SCOP2B (2021-05-27) |
CB [auth Bq] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 17 | 8091516 | 3002517 | SCOP2B (2021-05-27) |
Q [auth Aq] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 17 | 8091516 | 3002517 | SCOP2B (2021-05-27) |
DB [auth Br] | SCOP2B Superfamily | CYTH-like phosphatases | 8090011 | 3001426 | SCOP2B (2021-05-27) |
R [auth Ar] | SCOP2B Superfamily | CYTH-like phosphatases | 8090011 | 3001426 | SCOP2B (2021-05-27) |
GB [auth Bv] | SCOP2B Superfamily | Mediator subcomplex-like | 8051778 | 3001613 | SCOP2B (2021-05-27) |
U [auth Av] | SCOP2B Superfamily | Mediator subcomplex-like | 8051778 | 3001613 | SCOP2B (2021-05-27) |
X [auth AA] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8042682 | 3001330 | SCOP2B (2021-05-27) |
JB [auth BA] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8042682 | 3001330 | SCOP2B (2021-05-27) |
KB [auth BB] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8042684 | 3001330 | SCOP2B (2021-05-27) |
KB [auth BB] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8042684 | 3001330 | SCOP2B (2021-05-27) |
Y [auth AB] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8042684 | 3001330 | SCOP2B (2021-05-27) |
Y [auth AB] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8042684 | 3001330 | SCOP2B (2021-05-27) |
Z [auth AC] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8042685 | 3001655 | SCOP2B (2021-05-27) |
Z [auth AC] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8042687 | 3001500 | SCOP2B (2021-05-27) |
Z [auth AC] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8042685 | 3001655 | SCOP2B (2021-05-27) |
LB [auth BC] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8042685 | 3001655 | SCOP2B (2021-05-27) |
LB [auth BC] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8042687 | 3001500 | SCOP2B (2021-05-27) |
LB [auth BC] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8042685 | 3001655 | SCOP2B (2021-05-27) |
AA [auth AD] | SCOP2B Superfamily | HRDC-like | 8044250 | 3000132 | SCOP2B (2021-05-27) |
MB [auth BD] | SCOP2B Superfamily | HRDC-like | 8044250 | 3000132 | SCOP2B (2021-05-27) |
CA [auth AF] | SCOP2B Superfamily | RPB6/omega subunit-like | 8042688 | 3000189 | SCOP2B (2021-05-27) |
OB [auth BF] | SCOP2B Superfamily | RPB6/omega subunit-like | 8042688 | 3000189 | SCOP2B (2021-05-27) |
DA [auth AG] | SCOP2B Superfamily | N-terminal heterodimerisation domain of RBP7 (RpoE) | 8044252 | 3001137 | SCOP2B (2021-05-27) |
DA [auth AG] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044251 | 3000135 | SCOP2B (2021-05-27) |
PB [auth BG] | SCOP2B Superfamily | N-terminal heterodimerisation domain of RBP7 (RpoE) | 8044252 | 3001137 | SCOP2B (2021-05-27) |
PB [auth BG] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044251 | 3000135 | SCOP2B (2021-05-27) |
QB [auth BH] | SCOP2B Superfamily | RBP8/CHS5 N-terminal domain-like | 8093392 | 3002702 | SCOP2B (2021-05-27) |
QB [auth BH] | SCOP2B Superfamily | RBP8/CHS5 N-terminal domain-like | 8041967 | 3002702 | SCOP2B (2021-05-27) |
EA [auth AH] | SCOP2B Superfamily | RBP8/CHS5 N-terminal domain-like | 8093392 | 3002702 | SCOP2B (2021-05-27) |
EA [auth AH] | SCOP2B Superfamily | RBP8/CHS5 N-terminal domain-like | 8041967 | 3002702 | SCOP2B (2021-05-27) |
FA [auth AI] | SCOP2B Superfamily | Zinc beta-ribbon | 8042689 | 3001238 | SCOP2B (2021-05-27) |
FA [auth AI] | SCOP2B Superfamily | Zinc beta-ribbon | 8042690 | 3001238 | SCOP2B (2021-05-27) |
RB [auth BI] | SCOP2B Superfamily | Zinc beta-ribbon | 8042689 | 3001238 | SCOP2B (2021-05-27) |
RB [auth BI] | SCOP2B Superfamily | Zinc beta-ribbon | 8042690 | 3001238 | SCOP2B (2021-05-27) |
GA [auth AJ] | SCOP2B Superfamily | RNA polymerase subunit RPB10 | 8042692 | 3001213 | SCOP2B (2021-05-27) |
SB [auth BJ] | SCOP2B Superfamily | RNA polymerase subunit RPB10 | 8042692 | 3001213 | SCOP2B (2021-05-27) |
HA [auth AK] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8042694 | 3001655 | SCOP2B (2021-05-27) |
TB [auth BK] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8042694 | 3001655 | SCOP2B (2021-05-27) |
IA [auth AL] | SCOP2B Superfamily | RNA polymerase subunits | 8042695 | 3001823 | SCOP2B (2021-05-27) |
UB [auth BL] | SCOP2B Superfamily | RNA polymerase subunits | 8042695 | 3001823 | SCOP2B (2021-05-27) |
BC [auth Bf] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 6 | 8091511 | 3002516 | SCOP2B (2021-05-27) |
PA [auth Af] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 6 | 8091511 | 3002516 | SCOP2B (2021-05-27) |
BA [auth AE] | SCOP2B Superfamily | Eukaryotic RPB5 N-terminal domain | 8044454 | 3000444 | SCOP2B (2021-05-27) |
BA [auth AE] | SCOP2B Superfamily | RPB5-like RNA polymerase subunit | 8035939 | 3001722 | SCOP2B (2021-05-27) |
NB [auth BE] | SCOP2B Superfamily | Eukaryotic RPB5 N-terminal domain | 8044454 | 3000444 | SCOP2B (2021-05-27) |
NB [auth BE] | SCOP2B Superfamily | RPB5-like RNA polymerase subunit | 8035939 | 3001722 | SCOP2B (2021-05-27) |
YB [auth BS] | SCOP2B Superfamily | Elongation factor TFIIS domain 2 | 8036681 | 3001247 | SCOP2B (2021-05-27) |
MA [auth AS] | SCOP2B Superfamily | Elongation factor TFIIS domain 2 | 8036681 | 3001247 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
WA [auth Bt] | PF08612 | e7uioBt1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF08612 | ECOD (1.6) |
K [auth At] | PF08612 | e7uioAt1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF08612 | ECOD (1.6) |
L [auth Ag] | PF05983 | e7uioAg2 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: MED7 hinge region | F: PF05983 | ECOD (1.6) |
L [auth Ag] | PF05983 | e7uioAg1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05983 | ECOD (1.6) |
XA [auth Bg] | PF05983 | e7uioBg1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: MED7 hinge region | F: PF05983 | ECOD (1.6) |
XA [auth Bg] | PF05983 | e7uioBg2 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05983 | ECOD (1.6) |
M [auth Ah] | PF10232 | e7uioAh1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 8 | F: PF10232 | ECOD (1.6) |
YA [auth Bh] | PF10232 | e7uioBh1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 8 | F: PF10232 | ECOD (1.6) |
P [auth Ak] | PF10280 | e7uioAk1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 11 | F: PF10280 | ECOD (1.6) |
BB [auth Bk] | PF10280 | e7uioBk1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 11 | F: PF10280 | ECOD (1.6) |
DB [auth Br] | PF09637 | e7uioBr1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF09637 | ECOD (1.6) |
R [auth Ar] | PF09637 | e7uioAr1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF09637 | ECOD (1.6) |
FB [auth Bu] | PF11221 | e7uioBu1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: RNA polymerase II holoenzyme component SRB7 (MED21) | F: PF11221 | ECOD (1.6) |
T [auth Au] | PF11221 | e7uioAu1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: RNA polymerase II holoenzyme component SRB7 (MED21) | F: PF11221 | ECOD (1.6) |
GB [auth Bv] | PF06179 | e7uioBv1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 22 | F: PF06179 | ECOD (1.6) |
U [auth Av] | PF06179 | e7uioAv1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 22 | F: PF06179 | ECOD (1.6) |
HB [auth Bw] | PF05669 | e7uioBw1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05669 | ECOD (1.6) |
V [auth Aw] | PF05669 | e7uioAw1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05669 | ECOD (1.6) |
X [auth AA] | PF00623 | e7uioAA7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00623 | ECOD (1.6) |
X [auth AA] | PF00623 | e7uioAA4 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: PF00623 | ECOD (1.6) |
X [auth AA] | PF04990 | e7uioAA3 | A: a+b two layers | X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: PF04990 | ECOD (1.6) |
X [auth AA] | F_UNCLASSIFIED | e7uioAA2 | A: a+b two layers | X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
X [auth AA] | PF04997 | e7uioAA5 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: PF04997 | ECOD (1.6) |
X [auth AA] | PF04998 | e7uioAA9 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: PF04998 | ECOD (1.6) |
X [auth AA] | PF04992 | e7uioAA8 | A: a+b complex topology | X: helical domain in yeast RNA-polymerases | H: third helical domain in yeast RNA-polymerase II beta-prime subunit (From Topology) | T: third helical domain in yeast RNA-polymerase II beta-prime subunit | F: PF04992 | ECOD (1.6) |
X [auth AA] | PF04998,PF05000 | e7uioAA1 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: PF04998,PF05000 | ECOD (1.6) |
X [auth AA] | PF04983 | e7uioAA6 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: PF04983 | ECOD (1.6) |
JB [auth BA] | PF00623 | e7uioBA8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00623 | ECOD (1.6) |
JB [auth BA] | PF00623 | e7uioBA2 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: PF00623 | ECOD (1.6) |
JB [auth BA] | PF04990 | e7uioBA5 | A: a+b two layers | X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: PF04990 | ECOD (1.6) |
JB [auth BA] | F_UNCLASSIFIED | e7uioBA1 | A: a+b two layers | X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
JB [auth BA] | PF04997 | e7uioBA4 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: PF04997 | ECOD (1.6) |
JB [auth BA] | PF04998 | e7uioBA3 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: PF04998 | ECOD (1.6) |
JB [auth BA] | PF04992 | e7uioBA7 | A: a+b complex topology | X: helical domain in yeast RNA-polymerases | H: third helical domain in yeast RNA-polymerase II beta-prime subunit (From Topology) | T: third helical domain in yeast RNA-polymerase II beta-prime subunit | F: PF04992 | ECOD (1.6) |
JB [auth BA] | PF04998,PF05000 | e7uioBA9 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: PF04998,PF05000 | ECOD (1.6) |
JB [auth BA] | PF04983 | e7uioBA6 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: PF04983 | ECOD (1.6) |
KB [auth BB] | PF00562 | e7uioBB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
KB [auth BB] | PF00562 | e7uioBB3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
KB [auth BB] | PF04563,PF04565 | e7uioBB6 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
KB [auth BB] | PF04561 | e7uioBB7 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
KB [auth BB] | PF00562,PF04567 | e7uioBB4 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04567 | ECOD (1.6) |
KB [auth BB] | PF00562,PF04560 | e7uioBB5 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
KB [auth BB] | PF04566 | e7uioBB2 | A: a+b complex topology | X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | T: inserted a+b domain in yeast RNA polymerase beta subunit | F: PF04566 | ECOD (1.6) |
Y [auth AB] | PF00562 | e7uioAB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
Y [auth AB] | PF00562 | e7uioAB5 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
Y [auth AB] | PF04563,PF04565 | e7uioAB4 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
Y [auth AB] | PF04561 | e7uioAB3 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
Y [auth AB] | PF00562,PF04567 | e7uioAB7 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04567 | ECOD (1.6) |
Y [auth AB] | PF00562,PF04560 | e7uioAB2 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
Y [auth AB] | PF04566 | e7uioAB6 | A: a+b complex topology | X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | T: inserted a+b domain in yeast RNA polymerase beta subunit | F: PF04566 | ECOD (1.6) |
Z [auth AC] | PF01193 | e7uioAC2 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
Z [auth AC] | PF01000 | e7uioAC1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
LB [auth BC] | PF01193 | e7uioBC2 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
LB [auth BC] | PF01000 | e7uioBC1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
AA [auth AD] | PF03874 | e7uioAD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF03874 | ECOD (1.6) |
MB [auth BD] | PF03874 | e7uioBD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF03874 | ECOD (1.6) |
CA [auth AF] | PF01192 | e7uioAF1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RPB6 | F: PF01192 | ECOD (1.6) |
OB [auth BF] | PF01192 | e7uioBF1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RPB6 | F: PF01192 | ECOD (1.6) |
DA [auth AG] | PF00575 | e7uioAG1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
DA [auth AG] | PF03876 | e7uioAG2 | A: a+b two layers | X: Dodecin subunit-like | H: Flavin-binding protein dodecin-like (From Topology) | T: Flavin-binding protein dodecin-like | F: PF03876 | ECOD (1.6) |
PB [auth BG] | PF00575 | e7uioBG1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
PB [auth BG] | PF03876 | e7uioBG2 | A: a+b two layers | X: Dodecin subunit-like | H: Flavin-binding protein dodecin-like (From Topology) | T: Flavin-binding protein dodecin-like | F: PF03876 | ECOD (1.6) |
QB [auth BH] | PF03870 | e7uioBH1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF03870 | ECOD (1.6) |
EA [auth AH] | PF03870 | e7uioAH1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF03870 | ECOD (1.6) |
FA [auth AI] | PF01096 | e7uioAI1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01096 | ECOD (1.6) |
FA [auth AI] | PF02150 | e7uioAI2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF02150 | ECOD (1.6) |
RB [auth BI] | PF01096 | e7uioBI1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01096 | ECOD (1.6) |
RB [auth BI] | PF02150 | e7uioBI2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF02150 | ECOD (1.6) |
GA [auth AJ] | PF01194 | e7uioAJ1 | A: alpha arrays | X: HTH | H: RPB10 (From Topology) | T: RPB10 | F: PF01194 | ECOD (1.6) |
SB [auth BJ] | PF01194 | e7uioBJ1 | A: alpha arrays | X: HTH | H: RPB10 (From Topology) | T: RPB10 | F: PF01194 | ECOD (1.6) |
HA [auth AK] | PF13656 | e7uioAK1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF13656 | ECOD (1.6) |
TB [auth BK] | PF13656 | e7uioBK1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF13656 | ECOD (1.6) |
IA [auth AL] | PF03604 | e7uioAL1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF03604 | ECOD (1.6) |
UB [auth BL] | PF03604 | e7uioBL1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF03604 | ECOD (1.6) |
VB [auth BM] | PF08271 | e7uioBM1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF08271 | ECOD (1.6) |
JA [auth AM] | PF08271 | e7uioAM1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF08271 | ECOD (1.6) |
KA [auth AP] | F_UNCLASSIFIED | e7uioAP1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: F_UNCLASSIFIED | ECOD (1.6) |
WB [auth BP] | F_UNCLASSIFIED | e7uioBP1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: F_UNCLASSIFIED | ECOD (1.6) |
LA [auth AQ] | PF17683 | e7uioAQ1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: PF17683 | ECOD (1.6) |
XB [auth BQ] | PF17683 | e7uioBQ1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: PF17683 | ECOD (1.6) |
BC [auth Bf] | PF04934 | e7uioBf1 | A: extended segments | X: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 6 | F: PF04934 | ECOD (1.6) |
PA [auth Af] | PF04934 | e7uioAf1 | A: extended segments | X: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 6 | F: PF04934 | ECOD (1.6) |
BA [auth AE] | PF01191 | e7uioAE1 | A: a+b two layers | X: RPB5-like RNA polymerase subunit (From Topology) | H: RPB5-like RNA polymerase subunit (From Topology) | T: RPB5-like RNA polymerase subunit | F: PF01191 | ECOD (1.6) |
BA [auth AE] | PF03871 | e7uioAE2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Eukaryotic RPB5 N-terminal domain (From Topology) | T: Eukaryotic RPB5 N-terminal domain | F: PF03871 | ECOD (1.6) |
NB [auth BE] | PF01191 | e7uioBE2 | A: a+b two layers | X: RPB5-like RNA polymerase subunit (From Topology) | H: RPB5-like RNA polymerase subunit (From Topology) | T: RPB5-like RNA polymerase subunit | F: PF01191 | ECOD (1.6) |
NB [auth BE] | PF03871 | e7uioBE1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Eukaryotic RPB5 N-terminal domain (From Topology) | T: Eukaryotic RPB5 N-terminal domain | F: PF03871 | ECOD (1.6) |
YB [auth BS] | PF07500 | e7uioBS1 | A: alpha arrays | X: RuvA-C | H: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein (From Topology) | T: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | F: PF07500 | ECOD (1.6) |
YB [auth BS] | PF01096 | e7uioBS2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01096 | ECOD (1.6) |
MA [auth AS] | PF07500 | e7uioAS2 | A: alpha arrays | X: RuvA-C | H: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein (From Topology) | T: Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | F: PF07500 | ECOD (1.6) |
MA [auth AS] | PF01096 | e7uioAS1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01096 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
I [auth GA], J [auth GB] | PF03902 | Gal4-like dimerisation domain (Gal4_dimer) | Gal4-like dimerisation domain | - | Family |
I [auth GA], J [auth GB] | PF00172 | Fungal Zn(2)-Cys(6) binuclear cluster domain (Zn_clus) | Fungal Zn(2)-Cys(6) binuclear cluster domain | - | Domain |
JB [auth BA], X [auth AA] | PF00623 | RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) | RNA polymerase Rpb1, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ... | Domain |
JB [auth BA], X [auth AA] | PF04990 | RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) | RNA polymerase Rpb1, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 7, represents a mobile modu ... | Domain |
JB [auth BA], X [auth AA] | PF05000 | RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) | RNA polymerase Rpb1, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ... | Domain |
JB [auth BA], X [auth AA] | PF04983 | RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) | RNA polymerase Rpb1, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ... | Domain |
JB [auth BA], X [auth AA] | PF04992 | RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) | RNA polymerase Rpb1, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 6, represents a mobile modu ... | Domain |
JB [auth BA], X [auth AA] | PF04998 | RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) | RNA polymerase Rpb1, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ... | Domain |
JB [auth BA], X [auth AA] | PF10744 | Mediator of RNA polymerase II transcription subunit 1 (Med1) | Mediator of RNA polymerase II transcription subunit 1 | Mediator complexes are basic necessities for linking transcriptional regulators to RNA polymerase II. This domain, Med1, is conserved from plants to fungi to humans and forms part of the Med9 submodule of the Srb/Med complex. it is one of three subu ... | Domain |
JB [auth BA], X [auth AA] | PF04997 | RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) | RNA polymerase Rpb1, domain 1 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp do ... | Domain |
KB [auth BB], Y [auth AB] | PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain |
KB [auth BB], Y [auth AB] | PF04560 | RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7) | RNA polymerase Rpb2, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ... | Domain |
KB [auth BB], Y [auth AB] | PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain |
KB [auth BB], Y [auth AB] | PF04566 | RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4) | RNA polymerase Rpb2, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain ... | Domain |
KB [auth BB], Y [auth AB] | PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family |
KB [auth BB], Y [auth AB] | PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain |
KB [auth BB], Y [auth AB] | PF04567 | RNA polymerase Rpb2, domain 5 (RNA_pol_Rpb2_5) | RNA polymerase Rpb2, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain ... | Domain |
LB [auth BC], Z [auth AC] | PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
LB [auth BC], Z [auth AC] | PF11593 | Mediator complex subunit 3 fungal (Med3) | Mediator complex subunit 3 fungal | - | Family |
LB [auth BC], Z [auth AC] | PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain |
AA [auth AD], MB [auth BD] | PF10018 | Vitamin-D-receptor interacting Mediator subunit 4 (Med4) | Vitamin-D-receptor interacting Mediator subunit 4 | - | Family |
AA [auth AD], MB [auth BD] | PF03874 | RNA polymerase Rpb4 (RNA_pol_Rpb4) | RNA polymerase Rpb4 | - | Family |
CA [auth AF], OB [auth BF] | PF04934 | MED6 mediator sub complex component (Med6) | MED6 mediator sub complex component | - | Family |
CA [auth AF], OB [auth BF] | PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family |
DA [auth AG], PB [auth BG] | PF03876 | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at leas ... | Domain |
DA [auth AG], PB [auth BG] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
EA [auth AH], QB [auth BH] | PF10232 | Mediator of RNA polymerase II transcription complex subunit 8 (Med8) | Mediator of RNA polymerase II transcription complex subunit 8 | - | Family |
EA [auth AH], QB [auth BH] | PF03870 | RNA polymerase Rpb8 (RNA_pol_Rpb8) | RNA polymerase Rpb8 | - | Family |
FA [auth AI], RB [auth BI] | PF02150 | RNA polymerases M/15 Kd subunit (RNA_POL_M_15KD) | RNA polymerases M/15 Kd subunit | - | Domain |
FA [auth AI], RB [auth BI] | PF01096 | Transcription factor S-II (TFIIS) (TFIIS_C) | Transcription factor S-II (TFIIS) | - | Domain |
FA [auth AI], RB [auth BI] | PF07544 | RNA polymerase II transcription mediator complex subunit 9 (Med9) | RNA polymerase II transcription mediator complex subunit 9 | - | Family |
GA [auth AJ], SB [auth BJ] | PF01194 | RNA polymerases N / 8 kDa subunit (RNA_pol_N) | RNA polymerases N / 8 kDa subunit | - | Domain |
GA [auth AJ], SB [auth BJ] | PF09748 | Transcription factor subunit Med10 of Mediator complex (Med10) | Transcription factor subunit Med10 of Mediator complex | - | Family |
HA [auth AK], TB [auth BK] | PF10280 | Mediator complex protein (Med11) | Mediator complex protein | - | Family |
HA [auth AK], TB [auth BK] | PF13656 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
IA [auth AL], UB [auth BL] | PF03604 | DNA directed RNA polymerase, 7 kDa subunit (DNA_RNApol_7kD) | DNA directed RNA polymerase, 7 kDa subunit | - | Domain |
JA [auth AM], VB [auth BM] | PF08271 | TFIIB zinc-binding (TF_Zn_Ribbon) | TFIIB zinc-binding | The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ... | Domain |
KA [auth AP], WB [auth BP] | PF11635 | Mediator complex subunit 16, N-terminal (Med16_N) | Mediator complex subunit 16, N-terminal | - | Repeat |
LA [auth AQ], XB [auth BQ] | PF17683 | TFIIF, beta subunit N-terminus (TFIIF_beta_N) | TFIIF, beta subunit N-terminus | - | Family |
BA [auth AE], NB [auth BE] | PF01191 | RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C) | RNA polymerase Rpb5, C-terminal domain | The assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain. | Domain |
BA [auth AE], NB [auth BE] | PF03871 | RNA polymerase Rpb5, N-terminal domain (RNA_pol_Rpb5_N) | RNA polymerase Rpb5, N-terminal domain | Rpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA p ... | Domain |
MA [auth AS], YB [auth BS] | PF01096 | Transcription factor S-II (TFIIS) (TFIIS_C) | Transcription factor S-II (TFIIS) | - | Domain |
MA [auth AS], YB [auth BS] | PF07500 | Transcription factor S-II (TFIIS), central domain (TFIIS_M) | Transcription factor S-II (TFIIS), central domain | Transcription elongation by RNA polymerase II is regulated by the general elongation factor TFIIS. This factor stimulates RNA polymerase II to transcribe through regions of DNA that promote the formation of stalled ternary complexes. TFIIS is comp ... | Domain |
MA [auth AS], YB [auth BS] | PF08633 | Rox3 mediator complex subunit (Rox3) | Rox3 mediator complex subunit | - | Family |