7U06

Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite structure)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth F]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2021-05-27)
G [auth I]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2021-05-27)
P [auth f]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2021-05-27)
S [auth i]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2021-05-27)
E [auth G]SCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2021-05-27)
Q [auth g]SCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2021-05-27)
F [auth H]SCOP2B SuperfamilySNARE-like 8090320 3001113 SCOP2B (2021-05-27)
R [auth h]SCOP2B SuperfamilySNARE-like 8090320 3001113 SCOP2B (2021-05-27)
J [auth l]SCOP2B SuperfamilyRas-like P-loop GTPases 8056347 3002022 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]F_UNCLASSIFIEDe7u06C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
A [auth C]PF12735e7u06C2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF12735ECOD (1.6)
M [auth c]F_UNCLASSIFIEDe7u06c1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
M [auth c]PF12735e7u06c2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF12735ECOD (1.6)
B [auth D]PF04628e7u06D1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)
N [auth d]PF04628e7u06d1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)
D [auth F]PF04051e7u06F1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
G [auth I]PF04051e7u06I1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
P [auth f]PF04051e7u06f1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
S [auth i]PF04051e7u06i1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
E [auth G]PF04099e7u06G1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
Q [auth g]PF04099e7u06g1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
F [auth H]PF04099e7u06H1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
R [auth h]PF04099e7u06h1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
J [auth l]PF00071e7u06l1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00071ECOD (1.6)
O [auth e]PF04051e7u06e1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
I [auth K]PF04628e7u06K1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)
U [auth k]PF04628e7u06k1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth C],
M [auth c]		PF12735TRAPP trafficking subunit Trs65 (Trs65)TRAPP trafficking subunit Trs65- Family
B [auth D],
N [auth d]		PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family
D [auth F],
G [auth I],
P [auth f],
S [auth i]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
E [auth G],
Q [auth g]		PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
F [auth H],
R [auth h]		PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
H [auth J],
T [auth j]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
K [auth B],
V [auth b]		PF12584Trafficking protein particle complex subunit 10, TRAPPC10 (TRAPPC10)Trafficking protein particle complex subunit 10, TRAPPC10- Family
L [auth A],
W [auth a]		PF08626Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit (TRAPPC9-Trs120)Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit- Family
C [auth E],
O [auth e]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
I [auth K],
U [auth k]		PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C],
M [auth c]		Trafficking protein particle complex II-specific subunit 65-
B [auth D],
N [auth d]		TRAPP-associated protein TCA17-
D [auth F],
G [auth I],
P [auth f],
S [auth i]		Trafficking protein particle complex subunit BET3-
E [auth G],
Q [auth g]		Trafficking protein particle complex subunit BET5-
F [auth H],
R [auth h]		Trafficking protein particle complex subunit 23-
H [auth J],
T [auth j]		Trafficking protein particle complex subunit 31-
J [auth l]GTP-binding protein YPT32/YPT11
K [auth B],
V [auth b]		Trafficking protein particle complex II-specific subunit 130-
L [auth A],
W [auth a]		Trafficking protein particle complex II-specific subunit 120-
X [auth M],
Y [auth m]		Trafficking protein particle complex II-specific subunit 130---
AA [auth N],
Z [auth n]		Trafficking protein particle complex II-specific subunit 65---
C [auth E],
O [auth e]		Trafficking protein particle complex subunit 33-
I [auth K],
U [auth k]		Trafficking protein particle complex subunit 20-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C],
M [auth c]		IPR024662Trafficking protein particle complex II-specific subunit 65Family
B [auth D],
N [auth d]		IPR011012Longin-like domain superfamilyHomologous Superfamily
B [auth D],
N [auth d]		IPR006722Trafficking protein particle complex subunit 2Family
D [auth F],
G [auth I],
P [auth f],
S [auth i]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
D [auth F],
G [auth I],
P [auth f],
S [auth i]		IPR007194Transport protein particle (TRAPP) componentFamily
D [auth F],
G [auth I],
P [auth f],
S [auth i]		IPR016721Bet3 familyFamily
E [auth G],
Q [auth g]		IPR007233Trafficking protein particle complex subunitFamily
E [auth G],
Q [auth g]		IPR011012Longin-like domain superfamilyHomologous Superfamily
F [auth H],
R [auth h]		IPR007233Trafficking protein particle complex subunitFamily
F [auth H],
R [auth h]		IPR011012Longin-like domain superfamilyHomologous Superfamily
H [auth J],
T [auth j]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
H [auth J],
T [auth j]		IPR016696TRAPP I complex, subunit 5Family
H [auth J],
T [auth j]		IPR007194Transport protein particle (TRAPP) componentFamily
J [auth l]IPR001806Small GTPaseFamily
J [auth l]IPR005225Small GTP-binding protein domainDomain
J [auth l]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
K [auth B],
V [auth b]		IPR022233TRAPP II complex TRAPPC10, C-terminalDomain
K [auth B],
V [auth b]		IPR045126Trafficking protein particle complex subunit TRAPPC10/Trs130Family
L [auth A],
W [auth a]		IPR013935TRAPP II complex, Trs120Family
C [auth E],
O [auth e]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
C [auth E],
O [auth e]		IPR007194Transport protein particle (TRAPP) componentFamily
C [auth E],
O [auth e]		IPR037992TRAPP complex, Trs33 subunitFamily
I [auth K],
U [auth k]		IPR011012Longin-like domain superfamilyHomologous Superfamily
I [auth K],
U [auth k]		IPR006722Trafficking protein particle complex subunit 2Family