7TNT | pdb_00007tnt

The tubulin-based conoid from detergent-extract Toxoplasma gondii cells

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BA [auth 5A]	prok_STING	e7tnt5A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
CA [auth 5B]	prok_STING	e7tnt5B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
DA [auth 5C]	prok_STING	e7tnt5C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
EA [auth 5D]	prok_STING	e7tnt5D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
FA [auth 5E]	prok_STING	e7tnt5E1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
GA [auth 5F]	prok_STING	e7tnt5F1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
HA [auth 5G]	prok_STING	e7tnt5G1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
IA [auth 5H]	prok_STING	e7tnt5H1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
J [auth 3A]	prok_STING	e7tnt3A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
JA [auth 5I]	prok_STING	e7tnt5I1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
K [auth 3B]	prok_STING	e7tnt3B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
M [auth 3D]	prok_STING	e7tnt3D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
N [auth 3E]	prok_STING	e7tnt3E1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
O [auth 3F]	prok_STING	e7tnt3F1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
P [auth 3G]	prok_STING	e7tnt3G1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
Q [auth 3H]	prok_STING	e7tnt3H1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
R [auth 3I]	prok_STING	e7tnt3I1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
L [auth 3C]	prok_STING	e7tnt3C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
A [auth 2A]	prok_STING	e7tnt2A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
AA [auth 4I]	prok_STING	e7tnt4I1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
B [auth 2B]	prok_STING	e7tnt2B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
C [auth 2C]	prok_STING	e7tnt2C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
D [auth 2D]	prok_STING	e7tnt2D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
E [auth 2E]	prok_STING	e7tnt2E1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
F [auth 2F]	prok_STING	e7tnt2F1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
G [auth 2G]	prok_STING	e7tnt2G1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
H [auth 2H]	prok_STING	e7tnt2H1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
I [auth 2I]	prok_STING	e7tnt2I1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
S [auth 4A]	prok_STING	e7tnt4A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
T [auth 4B]	prok_STING	e7tnt4B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
U [auth 4C]	prok_STING	e7tnt4C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
W [auth 4E]	prok_STING	e7tnt4E1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
X [auth 4F]	prok_STING	e7tnt4F1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
Y [auth 4G]	prok_STING	e7tnt4G1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
Z [auth 4H]	prok_STING	e7tnt4H1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)
V [auth 4D]	prok_STING	e7tnt4D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: prok_STING	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	Tubulin beta chain	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	microtubule-based process cellular process	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	Tubulin alpha chain	structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	microtubule-based process cellular process	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR017975	Tubulin, conserved site	Conserved Site
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR000217	Tubulin	Family
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR002453	Beta tubulin	Family
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], BA [auth 5A], CA [auth 5B], DA [auth 5C], EA [auth 5D], FA [auth 5E], GA [auth 5F], HA [auth 5G], IA [auth 5H], J [auth 3A], JA [auth 5I], K [auth 3B], L [auth 3C], M [auth 3D], N [auth 3E], O [auth 3F], P [auth 3G], Q [auth 3H], R [auth 3I]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR017975	Tubulin, conserved site	Conserved Site
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR002452	Alpha tubulin	Family
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR000217	Tubulin	Family
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], A [auth 2A], AA [auth 4I], B [auth 2B], C [auth 2C], D [auth 2D], E [auth 2E], F [auth 2F], G [auth 2G], H [auth 2H], I [auth 2I], S [auth 4A], T [auth 4B], U [auth 4C], V [auth 4D], W [auth 4E], X [auth 4F], Y [auth 4G], Z [auth 4H]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.