7TBJ

Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth A1]	PF08801	e7tbjA12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
C [auth A3]	PF08801	e7tbjA32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
MA [auth I1]	PF11894	e7tbjI12	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
NA [auth I2]	PF11894	e7tbjI22	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
OA [auth I3]	PF11894	e7tbjI32	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
PA [auth I4]	PF11894	e7tbjI42	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
QA [auth I5]	PF11894	e7tbjI52	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
SB [auth P1]	F_UNCLASSIFIED	e7tbjP11	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
TB [auth P2]	F_UNCLASSIFIED	e7tbjP21	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
UB [auth P3]	F_UNCLASSIFIED	e7tbjP31	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
VB [auth P4]	F_UNCLASSIFIED	e7tbjP41	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
WB [auth Q1]	PF05172	e7tbjQ11	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
XB [auth Q2]	PF05172	e7tbjQ21	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
YB [auth Q3]	PF05172	e7tbjQ31	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
ZB [auth Q4]	PF05172	e7tbjQ41	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
B [auth A2]	PF08801	e7tbjA22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
D [auth A4]	PF08801	e7tbjA42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
EC [auth S1]	F_UNCLASSIFIED	e7tbjS12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
EC [auth S1]	PF03177	e7tbjS11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
FC [auth S2]	F_UNCLASSIFIED	e7tbjS22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
FC [auth S2]	PF03177	e7tbjS21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
GC [auth S3]	F_UNCLASSIFIED	e7tbjS32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
GC [auth S3]	PF03177	e7tbjS31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
HC [auth S4]	F_UNCLASSIFIED	e7tbjS42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
HC [auth S4]	PF03177	e7tbjS41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
IC [auth T1]	PF04121	e7tbjT11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
JC [auth T2]	PF04121	e7tbjT21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
KC [auth T3]	PF04121	e7tbjT31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
LC [auth T4]	PF04121	e7tbjT41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
MC [auth U1]	PF04121	e7tbjU11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
NC [auth U2]	PF04121	e7tbjU21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
OC [auth U3]	PF04121	e7tbjU31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
PC [auth U4]	PF04121	e7tbjU41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
QC [auth V1]	PF12110	e7tbjV11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
RC [auth V2]	PF12110	e7tbjV21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
SC [auth V3]	PF12110	e7tbjV31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
TC [auth V4]	PF12110	e7tbjV41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
UC [auth W1]	PF00400	e7tbjW11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
VC [auth W2]	PF00400	e7tbjW21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
WC [auth W3]	PF00400	e7tbjW31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
XC [auth W4]	PF00400	e7tbjW41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
AD [auth X3]	PF07575	e7tbjX31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
BD [auth X4]	PF07575	e7tbjX41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
YC [auth X1]	PF07575	e7tbjX11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
ZC [auth X2]	PF07575	e7tbjX21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
CD [auth Y1]	PF00400	e7tbjY11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
DD [auth Y2]	PF00400	e7tbjY21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ED [auth Y3]	PF00400	e7tbjY31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
FD [auth Y4]	PF00400	e7tbjY41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
GD [auth Z1]	PF11715	e7tbjZ13	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
GD [auth Z1]	PF22114	e7tbjZ12	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
GD [auth Z1]	F_UNCLASSIFIED	e7tbjZ11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
HD [auth Z2]	PF11715	e7tbjZ22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
HD [auth Z2]	PF22114	e7tbjZ21	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
HD [auth Z2]	F_UNCLASSIFIED	e7tbjZ23	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
ID [auth Z3]	PF11715	e7tbjZ31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
ID [auth Z3]	PF22114	e7tbjZ33	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
ID [auth Z3]	F_UNCLASSIFIED	e7tbjZ32	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
JD [auth Z4]	PF11715	e7tbjZ43	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
JD [auth Z4]	PF22114	e7tbjZ42	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
JD [auth Z4]	F_UNCLASSIFIED	e7tbjZ41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
KD [auth a1]	PF00400	e7tbja11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
LD [auth a2]	PF00400	e7tbja21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
MD [auth a3]	PF00400	e7tbja31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ND [auth a4]	PF00400	e7tbja41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
E [auth A5]	PF08801	e7tbjA52	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
F [auth A6]	PF08801	e7tbjA62	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
OD [auth b1]	F_UNCLASSIFIED	e7tbjb11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
PD [auth b2]	F_UNCLASSIFIED	e7tbjb21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
QD [auth b3]	F_UNCLASSIFIED	e7tbjb31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
RD [auth b4]	F_UNCLASSIFIED	e7tbjb41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
S [auth D1]	PF04097	e7tbjD11	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
T [auth D2]	PF04097	e7tbjD21	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
U [auth D3]	PF04097	e7tbjD31	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
V [auth D4]	PF04097	e7tbjD41	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
W [auth D5]	PF04097	e7tbjD51	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
X [auth D6]	PF04097	e7tbjD61	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
Y [auth D7]	PF04097	e7tbjD71	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

Prepare Data

Validate Data

Deposit Data

Help and Resources

7TBJ

Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage