7SZ1
Cryo-EM structure of the extracellular module of the full-length EGFR L834R bound to EGF. "tips-separated" conformation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Growth factor receptor domain-like | 8038763 | 3000398 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | L domain-like | 8038760 | 3001010 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Growth factor receptor domain-like | 8038763 | 3000398 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | L domain-like | 8038760 | 3001010 | SCOP2B (2021-05-27) |
B [auth C] | SCOP2B Superfamily | EGF/Laminin-like | 8033508 | 3000412 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | EGF/Laminin-like | 8033508 | 3000412 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01030 | e7sz1A2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: PF01030 | ECOD (1.6) |
A | PF00757 | e7sz1A3 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: PF00757 | ECOD (1.6) |
A | PF14843 | e7sz1A4 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: PF14843 | ECOD (1.6) |
C [auth B] | PF01030 | e7sz1B2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: PF01030 | ECOD (1.6) |
C [auth B] | PF00757 | e7sz1B3 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: PF00757 | ECOD (1.6) |
C [auth B] | PF14843 | e7sz1B4 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: PF14843 | ECOD (1.6) |
B [auth C] | PF00008 | e7sz1C1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: PF00008 | ECOD (1.6) |
D | PF00008 | e7sz1D1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: PF00008 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00757 | Furin-like cysteine rich region (Furin-like) | Furin-like cysteine rich region | - | Domain |
A, C [auth B] | PF01030 | Receptor L domain (Recep_L_domain) | Receptor L domain | - | Repeat |
A, C [auth B] | PF14843 | Growth factor receptor domain IV (GF_recep_IV) | Growth factor receptor domain IV | This is the fourth extracellular domain of receptor tyrosine protein kinases. Interaction between this domain and the furin-like domain (Pfam:PF00757) regulates the binding of ligands to the receptor L domains (Pfam:PF01030) [1]. | Domain |
B [auth C], D | PF00008 | EGF-like domain (EGF) | EGF-like domain | There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ... | Domain |