7SQJ | pdb_00007sqj

Cryo-EM structure of the seam subunits of the enteropathogenic E. coli O127:H6 flagellar filament


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BMIF4Ge7sqjB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: MIF4GECOD (v294.2)
AMIF4Ge7sqjA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: MIF4GECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF12445Flagellin protein (FliC)Flagellin protein- Family
A, B
PF00700Bacterial flagellin C-terminal helical region (Flagellin_C)Bacterial flagellin C-terminal helical regionFlagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].
Domain
A, B
PF00669Bacterial flagellin N-terminal helical region (Flagellin_N)Bacterial flagellin N-terminal helical region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage