7S7C
Human Nuclear Exosome Targeting (NEXT) complex bound to RNA (substrate 2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | RNA-binding domain RBD | 8061925 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13234 | e7s7cA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF13234 | ECOD (1.6) |
A | F_UNCLASSIFIED | e7s7cA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF08148 | e7s7cA5 | A: alpha arrays | X: Sec63 N-terminal subdomain-like (From Topology) | H: Sec63 N-terminal subdomain-like (From Topology) | T: Sec63 N-terminal subdomain-like | F: PF08148 | ECOD (1.6) |
A | PF00270 | e7s7cA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00270 | ECOD (1.6) |
A | PF00271 | e7s7cA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
A | PF13234 | e7s7cA6 | A: extended segments | X: Helical arch in Ski2-like helicases (From Topology) | H: Helical arch in Ski2-like helicases (From Topology) | T: Helical arch in Ski2-like helicases | F: PF13234 | ECOD (1.6) |
F [auth E] | PF13234 | e7s7cE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF13234 | ECOD (1.6) |
F [auth E] | PF13234 | e7s7cE2 | A: extended segments | X: Helical arch in Ski2-like helicases (From Topology) | H: Helical arch in Ski2-like helicases (From Topology) | T: Helical arch in Ski2-like helicases | F: PF13234 | ECOD (1.6) |
C | PF00076 | e7s7cC1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth E] | PF08148 | DSHCT (NUC185) domain (DSHCT) | DSHCT (NUC185) domain | This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [1]. | Domain |
A, F [auth E] | PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain |
A, F [auth E] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
A, F [auth E] | PF21408 | Exosome RNA helicase MTR4-like, stalk (MTR4-like_stalk) | Exosome RNA helicase MTR4-like, stalk | Exosome RNA helicase MTR4 is a conserved RNA helicase that functions together with the nuclear exosome and it is involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involv ... | Domain |
A, F [auth E] | PF13234 | Mtr4-like, beta-barrel domain (MTR4_beta-barrel) | Mtr4-like, beta-barrel domain | Exosome RNA helicase Mtr4 is a essential RNA helicase, and is an exosome-activating cofactor. It functions together with the nuclear exosome being involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclea ... | Domain |
B, G [auth F] | PF04046 | PSP (PSP) | PSP | - | Family |
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A, F [auth E] | P42285 | : |
B, G [auth F] | Q6NZY4 | : |
Q9Y580 | :