7S6H
Human PARP1 deltaV687-E688 bound to NAD+ analog EB-47 and to a DNA double strand break.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | ADP-ribosylation | 8036814 | 3001208 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | WGR domain-like | 8039231 | 3000760 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Domain of poly(ADP-ribose) polymerase | 8036812 | 3000280 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | WGR domain-like | 8039231 | 3000760 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | ADP-ribosylation | 8036814 | 3001208 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Domain of poly(ADP-ribose) polymerase | 8036812 | 3000280 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | PARP_reg | e7s6hB3 | A: alpha bundles | X: Domain of poly(ADP-ribose) polymerase (From Topology) | H: Domain of poly(ADP-ribose) polymerase (From Topology) | T: Domain of poly(ADP-ribose) polymerase | F: PARP_reg | ECOD (1.6) |
D [auth B] | WGR | e7s6hB2 | A: a+b two layers | X: WGR domain (From Topology) | H: WGR domain (From Topology) | T: WGR domain | F: WGR | ECOD (1.6) |
D [auth B] | PARP | e7s6hB1 | A: a+b complex topology | X: ADP-ribosylation (From Topology) | H: ADP-ribosylation (From Topology) | T: ADP-ribosylation | F: PARP | ECOD (1.6) |
H [auth D] | PARP_reg | e7s6hD2 | A: alpha bundles | X: Domain of poly(ADP-ribose) polymerase (From Topology) | H: Domain of poly(ADP-ribose) polymerase (From Topology) | T: Domain of poly(ADP-ribose) polymerase | F: PARP_reg | ECOD (1.6) |
H [auth D] | WGR | e7s6hD3 | A: a+b two layers | X: WGR domain (From Topology) | H: WGR domain (From Topology) | T: WGR domain | F: WGR | ECOD (1.6) |
H [auth D] | PARP | e7s6hD1 | A: a+b complex topology | X: ADP-ribosylation (From Topology) | H: ADP-ribosylation (From Topology) | T: ADP-ribosylation | F: PARP | ECOD (1.6) |
G [auth C] | PADR1,PLN03123 | e7s6hC1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: PADR1,PLN03123 | ECOD (1.6) |
G [auth C] | zf-PARP | e7s6hC2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PARP-type zinc finger | F: zf-PARP | ECOD (1.6) |
F [auth A] | PADR1,PLN03123 | e7s6hA2 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: PADR1,PLN03123 | ECOD (1.6) |
F [auth A] | zf-PARP | e7s6hA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PARP-type zinc finger | F: zf-PARP | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth B], H [auth D] | PF00644 | Poly(ADP-ribose) polymerase catalytic domain (PARP) | Poly(ADP-ribose) polymerase catalytic domain | - | Family |
D [auth B], H [auth D] | PF02877 | Poly(ADP-ribose) polymerase, regulatory domain (PARP_reg) | Poly(ADP-ribose) polymerase, regulatory domain | Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ... | Domain |
D [auth B], H [auth D] | PF05406 | WGR domain (WGR) | WGR domain | This domain is found in a variety of polyA polymerases as well as the E. coli molybdate metabolism regulator Swiss:P33345 and other proteins of unknown function. I have called this domain WGR after the most conserved central motif of the domain. The ... | Domain |
F [auth A], G [auth C] | PF00645 | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region (zf-PARP) | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | Poly(ADP-ribose) polymerase is an important regulatory component of the cellular response to DNA damage. The amino-terminal region of Poly(ADP-ribose) polymerase consists of two PARP-type zinc fingers. This region acts as a DNA nick sensor. | Domain |
F [auth A], G [auth C] | PF21728 | PADR1, N-terminal helical domain (PADR1_N) | PADR1, N-terminal helical domain | This entry represents de N-terminal helical region of PADR1 zinc-binding domain found in poly(ADP-ribose) polymerase-1 (PARP-1) from human and its homologues. The PADR1, known as the third zinc-binding domain (Zn3) localises between the N-terminal PA ... | Domain |
F [auth A], G [auth C] | PF08063 | PADR1 domain, zinc ribbon fold (PADR1_Zn_ribbon) | PADR1 domain, zinc ribbon fold | This is the zinc ribbon fold of the PADR1 domain found in poly(ADP-ribose)-polymerases, referred to as the third zinc-binding domain of these proteins [1-5]. The PADR1 domain is involved in protein-protein interactions that orchestrate PARP-1 activat ... | Domain |