7S4M

CryoEM structure of Methylocystis sp. str. Rockwell pMMO in a POPC nanodisc at 2.42 Angstrom resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF04744	e7s4mA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF04744	ECOD (1.6)
A	PF04744	e7s4mA2	A: alpha bundles	X: Long alpha-hairpin	H: PmoB helical hairpin (From Topology)	T: PmoB helical hairpin	F: PF04744	ECOD (1.6)
K [auth E]	PF04744	e7s4mE3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF04744	ECOD (1.6)
K [auth E]	PF04744	e7s4mE1	A: alpha bundles	X: Long alpha-hairpin	H: PmoB helical hairpin (From Topology)	T: PmoB helical hairpin	F: PF04744	ECOD (1.6)
L [auth I]	PF04744	e7s4mI3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF04744	ECOD (1.6)
L [auth I]	PF04744	e7s4mI2	A: alpha bundles	X: Long alpha-hairpin	H: PmoB helical hairpin (From Topology)	T: PmoB helical hairpin	F: PF04744	ECOD (1.6)
B [auth F]	PF02461	e7s4mF1	A: alpha bundles	X: PmoA (From Topology)	H: PmoA (From Topology)	T: PmoA	F: PF02461	ECOD (1.6)
C [auth B]	PF02461	e7s4mB1	A: alpha bundles	X: PmoA (From Topology)	H: PmoA (From Topology)	T: PmoA	F: PF02461	ECOD (1.6)
D [auth J]	PF02461	e7s4mJ1	A: alpha bundles	X: PmoA (From Topology)	H: PmoA (From Topology)	T: PmoA	F: PF02461	ECOD (1.6)
E [auth G]	PF04896	e7s4mG1	A: alpha bundles	X: STAT-like	H: Ammonia monooxygenase subunit C (From Topology)	T: Ammonia monooxygenase subunit C	F: PF04896	ECOD (1.6)
F [auth C]	PF04896	e7s4mC1	A: alpha bundles	X: STAT-like	H: Ammonia monooxygenase subunit C (From Topology)	T: Ammonia monooxygenase subunit C	F: PF04896	ECOD (1.6)
H [auth K]	PF04896	e7s4mK1	A: alpha bundles	X: STAT-like	H: Ammonia monooxygenase subunit C (From Topology)	T: Ammonia monooxygenase subunit C	F: PF04896	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth F], C [auth B], D [auth J]	PF02461	Ammonia monooxygenase (AMO)	Ammonia monooxygenase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, K [auth E], L [auth I]	Particulate methane monooxygenase alpha subunit	-	-	-
B [auth F], C [auth B], D [auth J]	Particulate methane monooxygenase beta subunit	monooxygenase activity oxidoreductase activity catalytic activity	-	membrane cellular anatomical entity
E [auth G], F [auth C], H [auth K]	Ammonia monooxygenase/methane monooxygenase, subunit C family protein	-	-	-
G [auth D], I [auth N], J [auth H]	Unidentified Helix	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth F], C [auth B], D [auth J]	IPR037001	Ammonia/particulate methane monooxygenase, subunit A superfamily	Homologous Superfamily
B [auth F], C [auth B], D [auth J]	IPR003393	Ammonia monooxygenase/particulate methane monooxygenase, subunit A	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
B [auth F], C [auth B], D [auth J]	OPM				Methane monooxygenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
B [auth F], C [auth B], D [auth J]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
B [auth F], C [auth B], D [auth J]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
B [auth F], C [auth B], D [auth J]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Oxygenases	Particulate methane monooxgenase (pMMO) in POPC nanodisc

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.