7S4L
CryoEM structure of Methylotuvimicrobium alcaliphilum 20Z pMMO in a POPC nanodisc at 2.46 Angstrom resolution
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095950 | 3002712 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PapD-like | 8095948 | 3002067 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095949 | 3002711 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095949 | 3002711 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | PapD-like | 8095948 | 3002067 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095950 | 3002712 | SCOP2B (2022-06-29) |
I [auth E] | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095949 | 3002711 | SCOP2B (2022-06-29) |
I [auth E] | SCOP2B Superfamily | PapD-like | 8095948 | 3002067 | SCOP2B (2022-06-29) |
I [auth E] | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095950 | 3002712 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Gx transporter-like | 8095954 | 3002268 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Gx transporter-like | 8095954 | 3002268 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Gx transporter-like | 8095954 | 3002268 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Monooxygenase_B_1st | e7s4lA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_1st | ECOD (1.6) |
A | Monooxygenase_B_3rd | e7s4lA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_3rd | ECOD (1.6) |
A | Monooxygenase_B_2nd | e7s4lA1 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: Monooxygenase_B_2nd | ECOD (1.6) |
H [auth D] | Monooxygenase_B_1st | e7s4lD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_1st | ECOD (1.6) |
H [auth D] | Monooxygenase_B_3rd | e7s4lD3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_3rd | ECOD (1.6) |
H [auth D] | Monooxygenase_B_2nd | e7s4lD2 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: Monooxygenase_B_2nd | ECOD (1.6) |
I [auth E] | Monooxygenase_B_1st | e7s4lE3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_1st | ECOD (1.6) |
I [auth E] | Monooxygenase_B_3rd | e7s4lE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_3rd | ECOD (1.6) |
I [auth E] | Monooxygenase_B_2nd | e7s4lE1 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: Monooxygenase_B_2nd | ECOD (1.6) |
B | AMO | e7s4lB1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: AMO | ECOD (1.6) |
F | AMO | e7s4lF1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: AMO | ECOD (1.6) |
G | AMO | e7s4lG1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: AMO | ECOD (1.6) |
C | AmoC | e7s4lC1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: AmoC | ECOD (1.6) |
D [auth H] | AmoC | e7s4lH1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: AmoC | ECOD (1.6) |
E [auth I] | AmoC | e7s4lI1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: AmoC | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, H [auth D], I [auth E] | PF04744 | Monooxygenase subunit B protein (Monooxygenase_B) | Monooxygenase subunit B protein | - | Family |
PF02461 | Ammonia monooxygenase (AMO) | Ammonia monooxygenase | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, H [auth D], I [auth E] | Particulate methane monooxygenase, B subunit | - | - | |
Particulate methane monooxygenase, A subunit | - | - | ||
C, D [auth H], E [auth I] | Particulate methane monooxygenase, C subunit | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Methane monooxygenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Oxygenases | Particulate methane monooxgenase (pMMO) in a POPC nanodisc |