7S1B
Crystal structure of Epstein-Barr virus glycoproteins gH/gL/gp42-peptide in complex with human neutralizing antibodies 769C2 and 770F7
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Interleukin 8-like chemokines | 8091615 | 3001955 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth H] | PF07654 | e7s1bH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth H] | PF07686 | e7s1bH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth L] | PF07654 | e7s1bL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth L] | PF07686 | e7s1bL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth X] | PF07654 | e7s1bX2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth X] | PF07686 | e7s1bX1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
A | PF17488 | e7s1bA1 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: PF17488 | ECOD (1.6) |
A | PF02489 | e7s1bA2 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF02489 | ECOD (1.6) |
B | PF11108 | e7s1bB1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF11108 | ECOD (1.6) |
F [auth Y] | PF07654 | e7s1bY1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth Y] | PF07686 | e7s1bY2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H] | Heavy Chain | IGHV4 | - | envelope glycoprotein h | SAbDab (2024-07-05) |
D [auth L] | Light Chain | IGKV3 | Kappa | envelope glycoprotein h | SAbDab (2024-07-05) |
E [auth X] | Heavy Chain | IGHV3 | - | envelope glycoprotein h | envelope glycoprotein l | SAbDab (2024-07-05) |
F [auth Y] | Light Chain | IGLV2 | Lambda | envelope glycoprotein h | envelope glycoprotein l | SAbDab (2024-07-05) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17488 | Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C) | Herpesvirus glycoprotein H C-terminal domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain. | Domain | |
PF02489 | Herpesvirus glycoprotein H main domain (Herpes_glycop_H) | Herpesvirus glycoprotein H main domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. | Domain | |
PF11108 | Viral glycoprotein L (Phage_glycop_gL) | Viral glycoprotein L | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
G [auth C] | IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily |
G [auth C] | IPR016187 | C-type lectin fold | Homologous Superfamily |
IPR038172 | Herpesvirus glycoprotein H, C-terminal domain superfamily | Homologous Superfamily | |
IPR003493 | Herpesvirus glycoprotein H | Family | |
IPR035305 | Herpesvirus glycoprotein H, C-terminal | Domain | |
IPR034708 | Envelope glycoprotein L | Family | |
IPR038313 | Herpesvirus glycoprotein L, rhadinovirus-type superfamily | Homologous Superfamily | |
IPR020175 | Herpesvirus glycoprotein L, rhadinovirus-type | Family |