7QIY
Specific features and methylation sites of a plant ribosome. 40S head ribosomal subunit.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth L] | SCOP2 Family | Ribosomal protein S10 | 8107735 | 4001240 | SCOP2 (2022-06-29) |
J [auth L] | SCOP2 Superfamily | Ribosomal protein S10 | 8107736 | 3001336 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Family | Cold shock DNA-binding domain-like | 8107783 | 4001909 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8107784 | 3000135 | SCOP2 (2022-06-29) |
L [auth N] | SCOP2 Family | Ribosomal protein S14p/S29e | 8107725 | 4003647 | SCOP2 (2022-06-29) |
L [auth N] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107726 | 3000068 | SCOP2 (2022-06-29) |
M [auth O] | SCOP2 Family | WD40-repeat | 8107747 | 4002744 | SCOP2 (2022-06-29) |
M [auth O] | SCOP2 Superfamily | WD40 repeat-like | 8107748 | 3001694 | SCOP2 (2022-06-29) |
N [auth P] | SCOP2 Family | Ribosomal protein S25-like | 8107737 | 4007308 | SCOP2 (2022-06-29) |
N [auth P] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8107738 | 3000034 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Family | Ribosomal protein S7 | 8107753 | 4001112 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Superfamily | Ribosomal protein S7 | 8107754 | 3000799 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Family | eS10-like | 8107755 | 4007434 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8107756 | 3000034 | SCOP2 (2022-06-29) |
F [auth H] | SCOP2 Family | Translational machinery components | 8107743 | 4000951 | SCOP2 (2022-06-29) |
F [auth H] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8107744 | 3000100 | SCOP2 (2022-06-29) |
H [auth J] | SCOP2 Family | Ribosomal protein S13 | 8107739 | 4000260 | SCOP2 (2022-06-29) |
H [auth J] | SCOP2 Superfamily | S13-like H2TH domain | 8107740 | 3000053 | SCOP2 (2022-06-29) |
I [auth K] | SCOP2 Family | Rps19E-like | 8107741 | 4000222 | SCOP2 (2022-06-29) |
I [auth K] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8107742 | 3000034 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth L] | Ribosomal_S10_1 | e7qiyL1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
K [auth M] | Ribosomal_S28e | e7qiyM1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
L [auth N] | Ribosomal_S14_2 | e7qiyN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
M [auth O] | ANAPC4_WD40_1 | e7qiyO1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_1 | ECOD (1.6) |
N [auth P] | Ribosomal_S25 | e7qiyP1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
B [auth D] | Ribosomal_S3_C | e7qiyD1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
B [auth D] | KH_2_3 | e7qiyD2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
C [auth E] | Ribosomal_S7_1 | e7qiyE1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
D [auth F] | S10_plectin | e7qiyF1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
E [auth G] | Ribosomal_S19 | e7qiyG1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
F [auth H] | Ribosomal_S9 | e7qiyH1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
G [auth I] | Ribosomal_S17e | e7qiyI1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
H [auth J] | Ribosomal_S13 | e7qiyJ1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
I [auth K] | Ribosomal_S19e | e7qiyK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
J [auth L] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
K [auth M] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
M [auth O] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
B [auth D] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
B [auth D] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
C [auth E] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
D [auth F] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
E [auth G] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
F [auth H] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
H [auth J] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
I [auth K] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |