7PZB
Structure of the Clr-cAMP-DNA complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00027 | e7pzbA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF00027 | ECOD (1.6) |
A | PF13545 | e7pzbA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF13545 | ECOD (1.6) |
B | PF00027 | e7pzbB1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF00027 | ECOD (1.6) |
B | PF13545 | e7pzbB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF13545 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13545 | Crp-like helix-turn-helix domain (HTH_Crp_2) | Crp-like helix-turn-helix domain | This family represents a crp-like helix-turn-helix domain that is likely to bind DNA. | Domain | |
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative cAMP-binding protein-catabolite gene activator | - | |||
DNA (5'-D(*CP*TP*AP*GP*GP*TP*AP*AP*CP*AP*TP*TP*AP*CP*TP*CP*GP*CP*G)-3') | - | - | - | |
DNA (5'-D(*GP*CP*GP*AP*GP*TP*AP*AP*TP*GP*TP*TP*AP*C)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018488 | Cyclic nucleotide-binding, conserved site | Conserved Site | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR012318 | Crp-type HTH domain | Domain | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |