7PXA

Open-gate mycobacterium 20S CP proteasome in complex MPA - global 3D refinement


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
CA [auth X]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
D [auth 4]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
E [auth 6]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
EA [auth Z]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
F [auth 8]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
HA [auth d]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
IA [auth f]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
P [auth K]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
T [auth O]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
V [auth Q]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
Y [auth T]SCOP2B SuperfamilyClass II glutamine amidotransferases 8085569 3000131 SCOP2B (2022-06-29)
AA [auth V]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
BA [auth W]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
DA [auth Y]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
FA [auth a]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
GA [auth b]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
M [auth H]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
O [auth J]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
Q [auth L]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
R [auth M]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
S [auth N]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
W [auth R]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
X [auth S]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
Z [auth U]SCOP2 FamilyProteasome subunits 8105993 4002254 SCOP2 (2022-06-29)
Z [auth U]SCOP2 SuperfamilyClass II glutamine amidotransferases 8105994 3000131 SCOP2 (2022-06-29)
Z [auth U]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)
U [auth P]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079171 3000131 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]Proteasomee7pxa01 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
C [auth 2]Proteasomee7pxa21 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
CA [auth X]Proteasomee7pxaX1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
D [auth 4]Proteasomee7pxa41 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
E [auth 6]Proteasomee7pxa61 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
EA [auth Z]Proteasomee7pxaZ1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
F [auth 8]Proteasomee7pxa81 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
HA [auth d]Proteasomee7pxad1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
IA [auth f]Proteasomee7pxaf1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
N [auth I]Proteasomee7pxaI1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
P [auth K]Proteasomee7pxaK1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
T [auth O]Proteasomee7pxaO1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
V [auth Q]Proteasomee7pxaQ1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Y [auth T]Proteasomee7pxaT1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
AA [auth V]Proteasomee7pxaV1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
BA [auth W]Proteasomee7pxaW1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
DA [auth Y]Proteasomee7pxaY1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
FA [auth a]Proteasomee7pxaa1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
GA [auth b]Proteasomee7pxab1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
M [auth H]Proteasomee7pxaH1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
O [auth J]Proteasomee7pxaJ1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Q [auth L]Proteasomee7pxaL1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
R [auth M]Proteasomee7pxaM1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
S [auth N]Proteasomee7pxaN1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
W [auth R]Proteasomee7pxaR1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
X [auth S]Proteasomee7pxaS1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Z [auth U]Proteasomee7pxaU1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
U [auth P]Proteasomee7pxaP1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Proteasome subunit alpha
AAA ATPase forming ring-shaped complexes
Proteasome subunit beta

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR022296Proteasome, alpha subunit, bacterialFamily
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR041626Proteasomal ATPase, N-terminal OB domainDomain
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR050168AAA ATPase domain-containing proteinFamily
IPR032501Proteasomal ATPase, second OB domainDomain
IPR022482Proteasome ATPaseFamily
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR023333Proteasome B-type subunitFamily
IPR022483Proteasome subunit beta, actinobacteriaFamily
IPR001353Proteasome, subunit alpha/betaFamily