7PMK
S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
Q [auth K] | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8043773 | 3000564 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 2] | MCM_OB | e7pmk25 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
A [auth 2] | MCM_C | e7pmk21 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
A [auth 2] | MCM_N | e7pmk24 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
A [auth 2] | MCM_AAA | e7pmk22 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
A [auth 2] | MCM_OB_4 | e7pmk23 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_4 | ECOD (1.6) |
B [auth 3] | MCM_OB | e7pmk35 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
B [auth 3] | MCM_C | e7pmk31 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
B [auth 3] | MCM_N | e7pmk33 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
B [auth 3] | MCM_AAA | e7pmk34 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
B [auth 3] | KOG0479 | e7pmk32 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: KOG0479 | ECOD (1.6) |
C [auth 4] | MCM_OB | e7pmk45 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
C [auth 4] | MCM_C | e7pmk42 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
C [auth 4] | MCM_N | e7pmk43 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
C [auth 4] | MCM_AAA | e7pmk44 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
C [auth 4] | MCM_OB_1 | e7pmk41 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_1 | ECOD (1.6) |
D [auth 5] | MCM_OB | e7pmk52 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
D [auth 5] | MCM_C | e7pmk51 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
D [auth 5] | KOG0481 | e7pmk53 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0481 | ECOD (1.6) |
D [auth 5] | MCM_N | e7pmk55 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
D [auth 5] | MCM_AAA | e7pmk54 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
D [auth 5] | MCM_OB_2 | e7pmk56 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_2 | ECOD (1.6) |
E [auth 6] | MCM_OB | e7pmk65 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
E [auth 6] | MCM_C | e7pmk63 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
E [auth 6] | MCM_N | e7pmk64 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
E [auth 6] | MCM_AAA | e7pmk61 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
E [auth 6] | MCM_OB_2 | e7pmk62 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_2 | ECOD (1.6) |
G [auth A] | Sld5_1 | e7pmkA1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: Sld5_1 | ECOD (1.6) |
G [auth A] | SLD5_C_2 | e7pmkA2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: SLD5_C_2 | ECOD (1.6) |
I [auth C] | Sld5 | e7pmkC1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: Sld5 | ECOD (1.6) |
I [auth C] | COG5138 | e7pmkC2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: COG5138 | ECOD (1.6) |
K [auth E] | CDC45_2nd | e7pmkE2 | A: alpha arrays | X: HhH/H2TH | H: Cdc45 CID domain (From Topology) | T: Cdc45 CID domain | F: CDC45_2nd | ECOD (1.6) |
K [auth E] | CDC45_3rd | e7pmkE3 | A: a+b three layers | X: C-terminal domain in DHH phosphoesterases (From Topology) | H: C-terminal domain in DHH phosphoesterases (From Topology) | T: C-terminal domain in DHH phosphoesterases | F: CDC45_3rd | ECOD (1.6) |
K [auth E] | CDC45_1st | e7pmkE1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: DHH phosphoesterases | F: CDC45_1st | ECOD (1.6) |
L [auth F] | Mcl1_mid | e7pmkF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: Mcl1_mid | ECOD (1.6) |
L [auth F] | KOG1274_1 | e7pmkF2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology) | T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain | F: KOG1274_1 | ECOD (1.6) |
M [auth G] | Mcl1_mid | e7pmkG1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: Mcl1_mid | ECOD (1.6) |
M [auth G] | KOG1274_1 | e7pmkG2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology) | T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain | F: KOG1274_1 | ECOD (1.6) |
N [auth H] | Mcl1_mid | e7pmkH1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: Mcl1_mid | ECOD (1.6) |
N [auth H] | KOG1274_1 | e7pmkH2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology) | T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain | F: KOG1274_1 | ECOD (1.6) |
J [auth D] | Sld5_2 | e7pmkD1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: Sld5_2 | ECOD (1.6) |
J [auth D] | SLD5_C_1 | e7pmkD2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: SLD5_C_1 | ECOD (1.6) |
Q [auth K] | Skp1_POZ | e7pmkK1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
T [auth R] | F_UNCLASSIFIED | e7pmkR3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth R] | F_UNCLASSIFIED | e7pmkR2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth R] | DNA_pol_E_B | e7pmkR1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: DNA_pol_E_B | ECOD (1.6) |
F [auth 7] | MCM_OB | e7pmk72 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
F [auth 7] | MCM_C | e7pmk75 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
F [auth 7] | MCM_N_1 | e7pmk74 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N_1 | ECOD (1.6) |
F [auth 7] | MCM_AAA | e7pmk73 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
F [auth 7] | KOG0482 | e7pmk71 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: KOG0482 | ECOD (1.6) |
H [auth B] | Sld5 | e7pmkB1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: Sld5 | ECOD (1.6) |
H [auth B] | KOG4071 | e7pmkB2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: KOG4071 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 2] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
A [auth 2] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
A [auth 2] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
A [auth 2] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
B [auth 3] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
B [auth 3] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
B [auth 3] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
B [auth 3] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
C [auth 4] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
C [auth 4] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
C [auth 4] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
C [auth 4] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
D [auth 5] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
D [auth 5] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
D [auth 5] | PF21933 | MCM5, C-terminal domain (MCM5_C) | MCM5, C-terminal domain | This entry represents the C-terminal domain of MCM5 from humans and its homologues, which is a HTH domain [1]. MCM5 is part of the MCM2-7 complex. | Domain |
D [auth 5] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
D [auth 5] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
E [auth 6] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
E [auth 6] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
E [auth 6] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
E [auth 6] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
G [auth A] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
I [auth C] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
I [auth C] | PF22466 | GINS/PriA/YqbF domain (GINS_N) | GINS/PriA/YqbF domain | This entry represents the GINS/PriA/YqbF domain, which is found in the N-terminal region of the GINS complex protein. The GINS complex is crucial for the establishment of DNA replication forks and replisome progression in eukaryotes. The crystal stru ... | Domain |
K [auth E] | PF02724 | CDC45 (CDC45) | CDC45-like protein | - | Family |
L [auth F], M [auth G], N [auth H] | PF12341 | Minichromosome loss protein, Mcl1, middle region (Mcl1_mid) | Minichromosome loss protein, Mcl1, middle region | - | Repeat |
L [auth F], M [auth G], N [auth H] | PF20946 | DNA polymerase alpha-binding protein Ctf4, C-terminal domain (Ctf4_C) | DNA polymerase alpha-binding protein Ctf4, C-terminal domain | This domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the ... | Domain |
S [auth Q] | PF22912 | Zinc finger domain of DNA polymerase-epsilon (zf-DPOE) | Zinc finger domain of DNA polymerase-epsilon | This zinc finger domain is found in the epsilon subunit of DNA polymerase. | Domain |
S [auth Q] | PF08490 | Domain of unknown function (DUF1744) (DUF1744) | Domain of unknown function (DUF1744) | This domain is found at the C-terminal of the epsilon catalytic subunit of DNA polymerase. It is found C terminal to Pfam:PF03104 and Pfam:PF00136. | Domain |
U [auth X] | PF04821 | Timeless protein (TIMELESS) | Timeless protein | - | Family |
J [auth D] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
J [auth D] | PF16922 | DNA replication complex GINS protein SLD5 C-terminus (SLD5_C) | DNA replication complex GINS protein SLD5 C-terminus | The C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. | Domain |
Q [auth K] | PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain |
Q [auth K] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
T [auth R] | PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family |
V [auth Y] | PF07962 | Replication Fork Protection Component Swi3 (Swi3) | Replication Fork Protection Component Swi3 | - | Family |
F [auth 7] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
F [auth 7] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
F [auth 7] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
F [auth 7] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
H [auth B] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |