7PLZ
Cryo-EM structure of the actomyosin-V complex in the rigor state (central 3er/2er, young JASP-stabilized F-actin)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Myosin s1 fragment N-terminal domain | 8032925 | 3000319 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | P-loop motor domain | 8032926 | 3002036 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | P-loop motor domain | 8032926 | 3002036 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Myosin s1 fragment N-terminal domain | 8032925 | 3000319 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | EF-hand | 8032927 | 3001983 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | EF-hand | 8032927 | 3001983 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e7plzA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00612 | e7plzA3 | A: alpha bundles | X: Myosin VI lever arm (From Topology) | H: Myosin VI lever arm (From Topology) | T: Myosin VI lever arm | F: PF00612 | ECOD (1.6) |
A | PF00063 | e7plzA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00063 | ECOD (1.6) |
D | F_UNCLASSIFIED | e7plzD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF00612 | e7plzD3 | A: alpha bundles | X: Myosin VI lever arm (From Topology) | H: Myosin VI lever arm (From Topology) | T: Myosin VI lever arm | F: PF00612 | ECOD (1.6) |
D | PF00063 | e7plzD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00063 | ECOD (1.6) |
B [auth C] | PF00022 | e7plzC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
E [auth F] | PF00022 | e7plzF2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
G | PF00022 | e7plzG2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
C [auth B] | F_UNCLASSIFIED | e7plzB2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth B] | PF13499 | e7plzB1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: PF13499 | ECOD (1.6) |
F [auth E] | F_UNCLASSIFIED | e7plzE1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth E] | PF13499 | e7plzE2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: PF13499 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00612 | IQ calmodulin-binding motif (IQ) | IQ calmodulin-binding motif | - | Motif | |
PF00063 | Myosin head (motor domain) (Myosin_head) | Myosin head (motor domain) | - | Domain | |
B [auth C], E [auth F], G | PF00022 | Actin (Actin) | Actin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036961 | Kinesin motor domain superfamily | Homologous Superfamily | |
IPR002710 | Dilute domain | Domain | |
IPR000048 | IQ motif, EF-hand binding site | Binding Site | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036103 | Class V myosin, motor domain | Domain | |
IPR037988 | Myosin 5a, cargo-binding domain | Domain | |
IPR001609 | Myosin head, motor domain | Domain | |
IPR004009 | Myosin, N-terminal, SH3-like | Domain | |
B [auth C], E [auth F], G | IPR020902 | Actin/actin-like conserved site | Conserved Site |
B [auth C], E [auth F], G | IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily |
B [auth C], E [auth F], G | IPR004001 | Actin, conserved site | Conserved Site |
B [auth C], E [auth F], G | IPR004000 | Actin family | Family |
C [auth B], F [auth E] | IPR002048 | EF-hand domain | Domain |
C [auth B], F [auth E] | IPR011992 | EF-hand domain pair | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth C], E [auth F], G | HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 |