7PHA

70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth F]SCOP2B SuperfamilyRibosomal protein S7 8107618 3000799 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyRibosomal protein S8 8107654 3000709 SCOP2B (2022-06-29)
L [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8107610 3000100 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyRibosomal protein S10 8107628 3001336 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyTranslational machinery components 8107646 3000571 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins 8107620 3000135 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyS13-like H2TH domain 8107648 3000053 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8107656 3000068 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8107606 3001284 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyL35p-like 8107614 3000790 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyNucleic acid-binding proteins 8107664 3000135 SCOP2B (2022-06-29)
V [auth R]SCOP2B SuperfamilyRibosomal protein S19 8107622 3000686 SCOP2B (2022-06-29)
Z [auth b]SCOP2B SuperfamilyTranslational proteins 8107626 3000811 SCOP2B (2022-06-29)
AA [auth c]SCOP2B SuperfamilyRibosomal protein L4 8107624 3001146 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyRL5-like 8107658 3001709 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyRibosomal protein L36 8107602 3001346 SCOP2B (2022-06-29)
GA [auth i]SCOP2B SuperfamilyRibosomal protein L13 8107608 3001134 SCOP2B (2022-06-29)
HA [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8107662 3000433 SCOP2B (2022-06-29)
IA [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8107650 3001045 SCOP2B (2022-06-29)
JA [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8107596 3000884 SCOP2B (2022-06-29)
KA [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8107666 3000995 SCOP2B (2022-06-29)
LA [auth n]SCOP2B SuperfamilyTranslational machinery components 8107652 3000571 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107604 3000334 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyRibosomal protein L20 8107632 3000563 SCOP2B (2022-06-29)
OA [auth q]SCOP2B Superfamilyl21p-like 8107634 3002005 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107660 3000334 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyRibosomal L27 protein-like 8107616 3000539 SCOP2B (2022-06-29)
WA [auth y]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107612 3001320 SCOP2B (2022-06-29)
XA [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107630 3001320 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8107598 3001473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]Ribosomal_L34e7pha01 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
J [auth F]Ribosomal_S7_1e7phaF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
K [auth G]Ribosomal_S8_Ne7phaG1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
K [auth G]Ribosomal_S8_Ce7phaG2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
L [auth H]Ribosomal_S9e7phaH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
M [auth I]Ribosomal_S10e7phaI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
N [auth J]Ribosomal_S11e7phaJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
O [auth K]Ribosom_S12_S23e7phaK1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
P [auth L]Ribosomal_S13_1e7phaL1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
Q [auth M]Ribosomal_S14e7phaM1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
R [auth N]Ribosomal_S15_1e7phaN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
S [auth O]Ribosomal_S16_1e7phaO1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
B [auth 1]Ribosomal_L35pe7pha11 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
T [auth P]Ribosomal_S17_1e7phaP1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
U [auth Q]Ribosomal_S18e7phaQ1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
V [auth R]Ribosomal_S19e7phaR1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
W [auth S]Ribosomal_S20pe7phaS1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
X [auth T]F_UNCLASSIFIEDe7phaT1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: F_UNCLASSIFIEDECOD (1.6)
Y [auth a]Ribosomal_L2_1e7phaa2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
Y [auth a]Ribosomal_L2_Ce7phaa1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
Z [auth b]Ribosomal_L3e7phab1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
AA [auth c]Ribosomal_L4e7phac1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
BA [auth d]Ribosomal_L5_Ce7phad1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
CA [auth e]Ribosomal_L6e7phae1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
CA [auth e]Ribosomal_L6_1e7phae2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
C [auth 2]Ribosomal_L36e7pha21 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
DA [auth f]Ribosomal_L9_Ne7phaf2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
DA [auth f]Ribosomal_L9_Ce7phaf1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_CECOD (1.6)
EA [auth g]Ribosomal_L10e7phag1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
FA [auth h]Ribosomal_L11e7phah2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
FA [auth h]Ribosomal_L11_Ne7phah1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
GA [auth i]Ribosomal_L13e7phai1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
HA [auth j]Ribosomal_L14e7phaj1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
IA [auth k]Ribosomal_L27Ae7phak1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
JA [auth l]Ribosomal_L16e7phal1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
KA [auth m]Ribosomal_L17_1e7pham1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
LA [auth n]Ribosomal_L18pe7phan1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
MA [auth o]Ribosomal_L19e7phao1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
D [auth 9]GTP_EFTU_D2_1e7pha92 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_1ECOD (1.6)
D [auth 9]GTP_EFTU_D3e7pha91 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: GTP_EFTU_D3ECOD (1.6)
D [auth 9]MnmE_helical_2nde7pha93 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
NA [auth p]Ribosomal_L20e7phap1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
OA [auth q]Ribosomal_L21pe7phaq1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
QA [auth s]Ribosomal_L23_2e7phas1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
RA [auth t]ribosomal_L24_1e7phat1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
SA [auth u]Ribosomal_L27e7phau1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
TA [auth v]Ribosomal_L28e7phav1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
VA [auth x]Ribosomal_L31e7phax1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
WA [auth y]Ribosomal_L32pe7phay1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
E [auth A]Ribosomal_S2e7phaA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
XA [auth z]Ribosomal_L33e7phaz1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
F [auth B]Ribosomal_S3_Ce7phaB2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
F [auth B]KH_2_1e7phaB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
G [auth C]S4e7phaC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
H [auth D]Ribosomal_S5_Ce7phaD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
H [auth D]Ribosomal_S5e7phaD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
J [auth F]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
J [auth F]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
K [auth G]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
L [auth H]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
L [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
L [auth H]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
M [auth I]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
M [auth I]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
N [auth J]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
N [auth J]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth K]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
O [auth K]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
P [auth L]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
Q [auth M]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
Q [auth M]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
R [auth N]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
R [auth N]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
S [auth O]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
S [auth O]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
B [auth 1]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
T [auth P]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
T [auth P]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
U [auth Q]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
U [auth Q]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
V [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
V [auth R]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
W [auth S]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
X [auth T]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
X [auth T]PF00467KOW motif (KOW)KOW motif- Family
C [auth 2]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
D [auth 9]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
D [auth 9]PF03143Elongation factor Tu C-terminal domain (GTP_EFTU_D3)Elongation factor Tu C-terminal domainElongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2].Domain
D [auth 9]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
E [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
E [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
E [auth A]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
F [auth B]PF07650KH domain (KH_2)KH domain- Domain
F [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
F [auth B]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
G [auth C]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
G [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth C]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
H [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
H [auth D]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
H [auth D]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
H [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
I [auth E]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L34
J [auth F]30S ribosomal protein S7
K [auth G]30S ribosomal protein S8
L [auth H]30S ribosomal protein S9
M [auth I]30S ribosomal protein S10
N [auth J]30S ribosomal protein S11
O [auth K]30S ribosomal protein S12
P [auth L]30S ribosomal protein S13
Q [auth M]30S ribosomal protein S14 type Z
R [auth N]30S ribosomal protein S15
S [auth O]30S ribosomal protein S16
B [auth 1]50S ribosomal protein L35
T [auth P]30S ribosomal protein S17
U [auth Q]30S ribosomal protein S18
V [auth R]30S ribosomal protein S19
W [auth S]30S ribosomal protein S20
X [auth T]30S ribosomal protein S21
Y [auth a]50S ribosomal protein L2
Z [auth b]50S ribosomal protein L3
AA [auth c]50S ribosomal protein L4
BA [auth d]50S ribosomal protein L5
CA [auth e]50S ribosomal protein L6
C [auth 2]50S ribosomal protein L36
DA [auth f]50S ribosomal protein L9
EA [auth g]50S ribosomal protein L10
FA [auth h]50S ribosomal protein L11
GA [auth i]50S ribosomal protein L13
HA [auth j]50S ribosomal protein L14
IA [auth k]50S ribosomal protein L15
JA [auth l]50S ribosomal protein L16
KA [auth m]50S ribosomal protein L17
LA [auth n]50S ribosomal protein L18
MA [auth o]50S ribosomal protein L19
D [auth 9]Elongation factor Tu -
NA [auth p]50S ribosomal protein L20
OA [auth q]50S ribosomal protein L21
PA [auth r]50S ribosomal protein L22
QA [auth s]50S ribosomal protein L23
RA [auth t]50S ribosomal protein L24
SA [auth u]50S ribosomal protein L27
TA [auth v]50S ribosomal protein L28
UA [auth w]50S ribosomal protein L29
VA [auth x]50S ribosomal protein L31
WA [auth y]50S ribosomal protein L32
E [auth A]30S ribosomal protein S2
XA [auth z]50S ribosomal protein L33 1
YA [auth 3]23S ribosomal RNA---
ZA [auth 4]5S ribosomal RNA---
AB [auth 5]16S ribosomal RNA---
BB [auth 6],
CB [auth 7]
tRNA-Phe---
F [auth B]30S ribosomal protein S3
G [auth C]30S ribosomal protein S4
H [auth D]30S ribosomal protein S5
I [auth E]30S ribosomal protein S6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
A [auth 0]IPR000271Large ribosomal subunit protein bL34Family
J [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
J [auth F]IPR000235Small ribosomal subunit protein uS7Family
J [auth F]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
J [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
J [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
K [auth G]IPR000630Small ribosomal subunit protein uS8Family
K [auth G]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
K [auth G]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
L [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth H]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
L [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth H]IPR000754Small ribosomal subunit protein uS9Family
L [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth I]IPR001848Small ribosomal subunit protein uS10Family
M [auth I]IPR027486Small ribosomal subunit protein uS10 domainDomain
M [auth I]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
M [auth I]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
N [auth J]IPR001971Small ribosomal subunit protein uS11Family
N [auth J]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
N [auth J]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
N [auth J]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth K]IPR006032Small ribosomal subunit protein uS12Family
O [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth K]IPR005679Ribosomal protein uS12, bacterial-typeFamily
P [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
P [auth L]IPR001892Small ribosomal subunit protein uS13Family
P [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
P [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
P [auth L]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
Q [auth M]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
Q [auth M]IPR001209Small ribosomal subunit protein uS14Family
Q [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
Q [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
R [auth N]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
R [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth N]IPR000589Small ribosomal subunit protein uS15Family
S [auth O]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
S [auth O]IPR000307Small ribosomal subunit protein bS16Family
B [auth 1]IPR021137Large ribosomal subunit protein bL35-likeFamily
B [auth 1]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
B [auth 1]IPR001706Large ribosomal subunit protein bL35Family
B [auth 1]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
T [auth P]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
T [auth P]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
T [auth P]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth P]IPR000266Small ribosomal subunit protein uS17Family
U [auth Q]IPR001648Small ribosomal subunit protein bS18Family
U [auth Q]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
U [auth Q]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
V [auth R]IPR002222Small ribosomal subunit protein uS19Family
V [auth R]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
V [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
V [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
W [auth S]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
W [auth S]IPR002583Small ribosomal subunit protein bS20Family
X [auth T]IPR001911Small ribosomal subunit protein bS21Family
Y [auth a]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
Y [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Y [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth a]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
Y [auth a]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
Y [auth a]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth a]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
Y [auth a]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
Y [auth a]IPR002171Large ribosomal subunit protein uL2Family
Z [auth b]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Z [auth b]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
Z [auth b]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Z [auth b]IPR000597Large ribosomal subunit protein uL3Family
AA [auth c]IPR013005Large ribosomal subunit protein uL4-likeFamily
AA [auth c]IPR002136Large ribosomal subunit protein uL4Family
AA [auth c]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
BA [auth d]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
BA [auth d]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
BA [auth d]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
BA [auth d]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
BA [auth d]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
BA [auth d]IPR002132Large ribosomal subunit protein uL5Family
CA [auth e]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
CA [auth e]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
CA [auth e]IPR000702Large ribosomal subunit protein uL6-likeFamily
CA [auth e]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
CA [auth e]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
C [auth 2]IPR000473Large ribosomal subunit protein bL36Family
C [auth 2]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
DA [auth f]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
DA [auth f]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
DA [auth f]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
DA [auth f]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
DA [auth f]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
DA [auth f]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
DA [auth f]IPR000244Large ribosomal subunit protein bL9Family
EA [auth g]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
EA [auth g]IPR001790Large ribosomal subunit protein uL10Family
EA [auth g]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
EA [auth g]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
EA [auth g]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
FA [auth h]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
FA [auth h]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
FA [auth h]IPR000911Ribosomal protein uL11Family
FA [auth h]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
FA [auth h]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
FA [auth h]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
FA [auth h]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
GA [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
GA [auth i]IPR005822Large ribosomal subunit protein uL13Family
GA [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
GA [auth i]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
HA [auth j]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
HA [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
HA [auth j]IPR000218Large ribosomal subunit protein uL14Family
HA [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IA [auth k]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IA [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
IA [auth k]IPR030878Large ribosomal subunit protein uL15Family
IA [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
JA [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
JA [auth l]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
JA [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
JA [auth l]IPR047873Large ribosomal subunit protein uL16Family
KA [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
KA [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
KA [auth m]IPR000456Large ribosomal subunit protein bL17Family
LA [auth n]IPR005484Large ribosomal subunit protein uL18Family
LA [auth n]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
MA [auth o]IPR001857Large ribosomal subunit protein bL19Family
MA [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
MA [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
MA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth 9]IPR005225Small GTP-binding domainDomain
D [auth 9]IPR000795Translational (tr)-type GTP-binding domainDomain
D [auth 9]IPR033720Elongation factor Tu, domain 2Domain
D [auth 9]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
D [auth 9]IPR031157Tr-type G domain, conserved siteConserved Site
D [auth 9]IPR004541Translation elongation factor EFTu/EF1A, bacterial/organelleFamily
D [auth 9]IPR004161Translation elongation factor EFTu-like, domain 2Domain
D [auth 9]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth 9]IPR004160Translation elongation factor EFTu/EF1A, C-terminalDomain
D [auth 9]IPR050055Elongation factor Tu GTPaseFamily
D [auth 9]IPR041709Elongation factor Tu (EF-Tu), GTP-binding domainDomain
D [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
NA [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
NA [auth p]IPR005813Large ribosomal subunit protein bL20Family
OA [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
OA [auth q]IPR001787Large ribosomal subunit protein bL21Family
OA [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
OA [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
PA [auth r]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
PA [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
PA [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
PA [auth r]IPR001063Large ribosomal subunit protein uL22Family
PA [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
QA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
QA [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
QA [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
RA [auth t]IPR003256Large ribosomal subunit protein uL24Family
RA [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
RA [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
RA [auth t]IPR005824KOWDomain
RA [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
SA [auth u]IPR001684Large ribosomal subunit protein bL27Family
SA [auth u]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
TA [auth v]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
TA [auth v]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
TA [auth v]IPR050096Bacterial ribosomal protein bL28Family
TA [auth v]IPR026569Large ribosomal subunit protein bL28Family
TA [auth v]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
UA [auth w]IPR050063Universal ribosomal protein uL29Family
UA [auth w]IPR001854Large ribosomal subunit protein uL29Family
UA [auth w]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
UA [auth w]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
VA [auth x]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
VA [auth x]IPR027491Large ribosomal subunit protein bL31 type AFamily
VA [auth x]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
VA [auth x]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
WA [auth y]IPR002677Large ribosomal subunit protein bL32Family
WA [auth y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth y]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
E [auth A]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
E [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
E [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
E [auth A]IPR001865Small ribosomal subunit protein uS2Family
XA [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XA [auth z]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
XA [auth z]IPR001705Large ribosomal subunit protein bL33Family
XA [auth z]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
F [auth B]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
F [auth B]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
F [auth B]IPR004087K Homology domainDomain
F [auth B]IPR004044K Homology domain, type 2Domain
F [auth B]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
F [auth B]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
F [auth B]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
F [auth B]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
G [auth C]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
G [auth C]IPR002942RNA-binding S4 domainDomain
G [auth C]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
G [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth C]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
G [auth C]IPR022801Small ribosomal subunit protein uS4Family
H [auth D]IPR000851Small ribosomal subunit protein uS5Family
H [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
H [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
H [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
H [auth D]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
H [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
I [auth E]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
I [auth E]IPR000529Small ribosomal subunit protein bS6Family
I [auth E]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
I [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
I [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily