7PEL
CryoEM structure of simian T-cell lymphotropic virus intasome in complex with PP2A regulatory subunit B56 gamma
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IN_DBD_C | e7pelA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
A | F_UNCLASSIFIED | e7pelA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
A | rve | e7pelA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
B | IN_DBD_C | e7pelB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
B | F_UNCLASSIFIED | e7pelB3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
B | rve | e7pelB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
F [auth D] | IN_DBD_C | e7pelD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
F [auth D] | F_UNCLASSIFIED | e7pelD2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth D] | rve | e7pelD3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
G [auth E] | IN_DBD_C | e7pelE2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
G [auth E] | F_UNCLASSIFIED | e7pelE3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth E] | rve | e7pelE1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
C | B56 | e7pelC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: B56 | ECOD (1.6) |
H [auth F] | B56 | e7pelF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: B56 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, F [auth D], G [auth E] | PF02022 | Integrase Zinc binding domain (Integrase_Zn) | Integrase Zinc binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ... | Domain |
A, B, F [auth D], G [auth E] | PF00552 | Integrase DNA binding domain (IN_DBD_C) | Integrase DNA binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ... | Domain |
A, B, F [auth D], G [auth E] | PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain |
C, H [auth F] | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) (B56) | Protein phosphatase 2A regulatory B subunit (B56 family) | - | Repeat |