7PA7 | pdb_00007pa7

BK polyomavirus VP1 in complex with scFv 29B1

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth QQQ]	C8	e7pa7QQQ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
J [auth PPP]	C8	e7pa7PPP1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
I [auth OOO]	C8	e7pa7OOO1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
H [auth NNN]	C8	e7pa7NNN1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
G [auth MMM]	C8	e7pa7MMM1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
F [auth EEE]	C8	e7pa7EEE1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
E [auth DDD]	C8	e7pa7DDD1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
D [auth CCC]	C8	e7pa7CCC1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
C [auth BBB]	C8	e7pa7BBB1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
B [auth AAA]	C8	e7pa7AAA1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
T [auth qqq]	C8	e7pa7qqq2	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
S [auth ppp]	C8	e7pa7ppp1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
R [auth ooo]	C8	e7pa7ooo2	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
Q [auth nnn]	C8	e7pa7nnn1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
P [auth mmm]	C8	e7pa7mmm1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
O [auth ddd]	C8	e7pa7ddd2	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
N [auth ccc]	C8	e7pa7ccc1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
M [auth bbb]	C8	e7pa7bbb2	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
L [auth aaa]	C8	e7pa7aaa1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)
A [auth eee]	C8	e7pa7eee2	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: C8	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth MMM], H [auth NNN], I [auth OOO], J [auth PPP], K [auth QQQ]	Major capsid protein VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization caveolin-mediated endocytosis vesicle-mediated transport virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization caveolin-mediated endocytosis vesicle-mediated transport localization symbiont entry into host cell caveolin-mediated endocytosis of virus by host cell symbiont entry into host cellular process endocytosis involved in viral entry into host cell receptor-mediated endocytosis endocytosis	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth eee], L [auth aaa], M [auth bbb], N [auth ccc], O [auth ddd], A [auth eee], L [auth aaa], M [auth bbb], N [auth ccc], O [auth ddd], P [auth mmm], Q [auth nnn], R [auth ooo], S [auth ppp], T [auth qqq]	scFv 29B1 antibody heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth MMM], H [auth NNN], I [auth OOO], J [auth PPP], K [auth QQQ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth MMM], H [auth NNN], I [auth OOO], J [auth PPP], K [auth QQQ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth MMM], H [auth NNN], I [auth OOO], J [auth PPP], K [auth QQQ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.