7OY7

Crystal structure of a trapped Pab-AGOG/double-standed DNA covalent intermediate (DNA containing cytosine opposite to lesion)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF09171e7oy7A1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: DNA-glycosylaseF: PF09171ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09171N-glycosylase/DNA lyase (AGOG)N-glycosylase/DNA lyaseThis domain is predominantly found in the Archaeal protein N-glycosylase/DNA lyase.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
N-glycosylase/DNA lyase -
DNA (5'-D(*TP*TP*TP*(PED)P*TP*TP*TP*CP*T)-3')---
C [auth I]DNA (5'-D(*AP*GP*AP*AP*AP*CP*AP*AP*A)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR015254N-glycosylase/DNA lyase-likeFamily
IPR016544N-glycosylase/DNA lyaseFamily
IPR011257DNA glycosylaseHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
PED RESID:  AA0494

PSI-MOD :  N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium MOD:01454