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 7OSE | pdb_00007ose

cytochrome bd-II type oxidase with bound aurachin D


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be7oseB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF:ECOD (v295.2)
Ee7oseE1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF:ECOD (v295.2)
DSBP_bac_1e7oseD1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: SBP_bac_1ECOD (v295.2)
ATVHS-likee7oseA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: TVHS-likeECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, F
PF08173Membrane bound YbgT-like protein (YbgT_YccB)Membrane bound YbgT-like protein- Family
B, E
PF02322Cytochrome bd terminal oxidase subunit II (Cyt_bd_oxida_II)Cytochrome bd terminal oxidase subunit IIThis family consists of cytochrome bd type terminal oxidases that catalyse quinol-dependent, Na+-independent oxygen uptake [2]. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family Swi ...This family consists of cytochrome bd type terminal oxidases that catalyse quinol-dependent, Na+-independent oxygen uptake [2]. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family Swiss:O05192 is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae [1]. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, Pfam:PF01654.
Domain
A, D
PF01654Cytochrome bd terminal oxidase subunit I (Cyt_bd_oxida_I)Cytochrome bd terminal oxidase subunit IThis family are the alternative oxidases found in many bacteria which oxidise ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of ...This family are the alternative oxidases found in many bacteria which oxidise ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F
Putative cytochrome bd-II ubiquinol oxidase subunit AppX- -
B, E
Cytochrome bd-II ubiquinol oxidase subunit 2
A, D
Cytochrome bd-II ubiquinol oxidase subunit 1

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD