7OBP | pdb_00007obp

Crystal structure of the human NCOA7-AS TLDc domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	zf-C3HC4	e7obpF1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.2)
E	zf-C3HC4	e7obpE1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.2)
D	zf-C3HC4	e7obpD1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.2)
C	zf-C3HC4	e7obpC1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.2)
B	zf-C3HC4	e7obpB1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.2)
A	WD40	e7obpA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF07534	TLDc domain (TLD)	TLDc domain	This domain is predicted to be an enzyme [1] and is often found associated with Pfam:PF01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	NCOA7-AS	transcription coactivator activity transcription regulator activity transcription coregulator activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding DNA-binding transcription factor binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process response to oxidative stress response to stimulus response to stress cellular response to stimulus cellular response to oxidative stress regulation of cellular response to stress negative regulation of biological process cellular response to chemical stress regulation of cellular response to oxidative stress cellular response to stress regulation of response to stress regulation of response to oxidative stress negative regulation of cellular process negative regulation of response to oxidative stress negative regulation of cellular response to oxidative stress negative regulation of response to stimulus cellular response to chemical stimulus regulation of response to stimulus response to chemical positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR006571	TLDc domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR018392	LysM domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	: Q8NI08	prostate cancer ovarian cancer pituitary cancer Prostatic Neoplasms ulcerative colitis adrenal cortex carcinoma breast cancer Duchenne muscular dystrophy glioblastoma juvenile dermatomyositis malignant glioma myopathy pancreatic ductal adenocarcinoma primitive neuroectodermal tumor psoriasis prostate cancer ovarian cancer pituitary cancer Prostatic Neoplasms ulcerative colitis adrenal cortex carcinoma breast cancer Duchenne muscular dystrophy glioblastoma juvenile dermatomyositis malignant glioma myopathy pancreatic ductal adenocarcinoma primitive neuroectodermal tumor psoriasis astrocytic tumor breast carcinoma Emery-Dreifuss muscular dystrophy head and neck cancer large cell medulloblastoma malignant pancreatic neoplasm oligodendroglioma pilocytic astrocytoma transitional cell carcinoma atypical teratoid rhabdoid tumor diabetes mellitus endometrial carcinoma interstitial lung disease malignant ependymoma medulloblastoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.