7O78
Structure of the PL6 family chondroitinase B from Pseudopedobacter saltans, Pedsa3807
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d7o78a_ | All beta proteins | Single-stranded right-handed beta-helix | Pectin lyase-like | Chondroitinase B | automated matches | Pedobacter saltans (Pseudopedobacter saltans DSM 12145 ) [TaxId: 762903 ], | SCOPe (2.08) |
B | d7o78b1 | All beta proteins | Single-stranded right-handed beta-helix | Pectin lyase-like | Chondroitinase B | automated matches | Pedobacter saltans (Pseudopedobacter saltans DSM 12145 ) [TaxId: 762903 ], | SCOPe (2.08) |
B | d7o78b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Pedobacter saltans (Pseudopedobacter saltans DSM 12145 ) [TaxId: 762903 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Chondroitinas_B | e7o78A1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Chondroitinas_B | ECOD (1.6) |
B | Chondroitinas_B | e7o78B1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Chondroitinas_B | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14592 | Chondroitinase B (Chondroitinas_B) | Chondroitinase B | - | Repeat |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR039513 | PL-6 family | Family | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |