7NZ2
Cryo-EM structure of the MukBEF-MatP-DNA tetrad
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth C1] | KicB | e7nz2C12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KicB | ECOD (1.6) |
I [auth C1] | MukF_C | e7nz2C13 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukF_C | ECOD (1.6) |
I [auth C1] | MukF_M | e7nz2C11 | A: alpha bundles | X: STAT-like | H: MukF C-terminal domain-like (From Topology) | T: MukF C-terminal domain-like | F: MukF_M | ECOD (1.6) |
J [auth C2] | KicB | e7nz2C22 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KicB | ECOD (1.6) |
J [auth C2] | MukF_C | e7nz2C23 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukF_C | ECOD (1.6) |
J [auth C2] | MukF_M | e7nz2C21 | A: alpha bundles | X: STAT-like | H: MukF C-terminal domain-like (From Topology) | T: MukF C-terminal domain-like | F: MukF_M | ECOD (1.6) |
K [auth D1] | KicB | e7nz2D12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KicB | ECOD (1.6) |
K [auth D1] | MukF_C | e7nz2D13 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukF_C | ECOD (1.6) |
K [auth D1] | MukF_M | e7nz2D11 | A: alpha bundles | X: STAT-like | H: MukF C-terminal domain-like (From Topology) | T: MukF C-terminal domain-like | F: MukF_M | ECOD (1.6) |
L [auth D2] | KicB | e7nz2D22 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KicB | ECOD (1.6) |
L [auth D2] | MukF_C | e7nz2D23 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukF_C | ECOD (1.6) |
L [auth D2] | MukF_M | e7nz2D21 | A: alpha bundles | X: STAT-like | H: MukF C-terminal domain-like (From Topology) | T: MukF C-terminal domain-like | F: MukF_M | ECOD (1.6) |
M [auth E1] | MukE_C | e7nz2E11 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
M [auth E1] | MukE_N | e7nz2E12 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
N [auth E2] | MukE_C | e7nz2E22 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
N [auth E2] | MukE_N | e7nz2E21 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
O [auth E3] | MukE_C | e7nz2E32 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
O [auth E3] | MukE_N | e7nz2E31 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
P [auth E4] | MukE_C | e7nz2E42 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
P [auth E4] | MukE_N | e7nz2E41 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
Q [auth F1] | MukE_C | e7nz2F12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
Q [auth F1] | MukE_N | e7nz2F11 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
R [auth F2] | MukE_C | e7nz2F21 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
R [auth F2] | MukE_N | e7nz2F22 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
S [auth F3] | MukE_C | e7nz2F32 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
S [auth F3] | MukE_N | e7nz2F31 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
T [auth F4] | MukE_C | e7nz2F41 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: MukE_C | ECOD (1.6) |
T [auth F4] | MukE_N | e7nz2F42 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: MukE_N | ECOD (1.6) |
AA [auth H3] | PP-binding | e7nz2H31 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
BA [auth H4] | PP-binding | e7nz2H41 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
U [auth G1] | PP-binding | e7nz2G11 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
V [auth G2] | PP-binding | e7nz2G21 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
W [auth G3] | PP-binding | e7nz2G31 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
X [auth G4] | PP-binding | e7nz2G41 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
Y [auth H1] | PP-binding | e7nz2H11 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
Z [auth H2] | PP-binding | e7nz2H21 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
CA [auth I1] | MatP_C | e7nz2I11 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
CA [auth I1] | MatP | e7nz2I12 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
DA [auth I2] | MatP_C | e7nz2I21 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
DA [auth I2] | MatP | e7nz2I22 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
EA [auth I3] | MatP_C | e7nz2I31 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
EA [auth I3] | MatP | e7nz2I32 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
FA [auth I4] | MatP_C | e7nz2I42 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
FA [auth I4] | MatP | e7nz2I41 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
GA [auth J1] | MatP_C | e7nz2J11 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
GA [auth J1] | MatP | e7nz2J12 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
HA [auth J2] | MatP_C | e7nz2J21 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
HA [auth J2] | MatP | e7nz2J22 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
IA [auth J3] | MatP_C | e7nz2J32 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
IA [auth J3] | MatP | e7nz2J31 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
JA [auth J4] | MatP_C | e7nz2J42 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: MatP_C | ECOD (1.6) |
JA [auth J4] | MatP | e7nz2J41 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: MatP | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13558 | SbcC/RAD50-like, Walker B motif (SbcC_Walker_B) | SbcC/RAD50-like, Walker B motif | This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homologue SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is sepa ... | Domain | |
PF16330 | MukB hinge domain (MukB_hinge) | MukB hinge domain | The hinge domain of chromosome partition protein MukB is responsible for dimerisation and is also involved in protein-DNA interactions and conformational flexibility [1]. | Domain | |
PF04310 | MukB N-terminal (MukB) | MukB N-terminal | This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consist ... | Domain | |
I [auth C1], J [auth C2], K [auth D1], L [auth D2] | PF17193 | MukF C-terminal domain (MukF_C) | MukF C-terminal domain | This presumed domain is found at the C-terminus of the MukF protein. | Domain |
I [auth C1], J [auth C2], K [auth D1], L [auth D2] | PF17192 | MukF middle domain (MukF_M) | MukF middle domain | The kicA and kicB genes are found upstream of mukB. It has been suggested that the kicB gene encodes a killing factor and the kicA gene codes for a protein that suppresses the killing function of the kicB gene product [1]. It was also demonstrated th ... | Domain |
PF04288 | MukE-like family (MukE) | MukE-like family | - | Family | |
PF17414 | MatP C-terminal ribbon-helix-helix domain (MatP_C) | MatP C-terminal ribbon-helix-helix domain | This family, many of whose members are YcbG, organises the macrodomain Ter of the chromosome of bacteria such as E coli. In these bacteria, insulated macrodomains influence the segregation of sister chromatids and the mobility of chromosomal DNA. Org ... | Domain | |
PF06303 | MatP N-terminal domain (MatP) | MatP N-terminal domain | This family, many of whose members are YcbG, organises the macrodomain Ter of the chromosome of bacteria such as E coli. In these bacteria, insulated macrodomains influence the segregation of sister chromatids and the mobility of chromosomal DNA. Org ... | Domain | |