7NSU
ColicinE9 intact translocation complex
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Porins | 8033399 | 3000224 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Porins | 8033399 | 3000224 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Porins | 8033399 | 3000224 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | YWTD domain-like | 8042387 | 3000494 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TolB N-terminal domain-like | 8042388 | 3000482 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Porins | 8042029 | 3000224 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Porin_1 | e7nsuA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Porin_1 | ECOD (1.6) |
B | Porin_1 | e7nsuB1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Porin_1 | ECOD (1.6) |
C | Porin_1 | e7nsuC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Porin_1 | ECOD (1.6) |
E | DPPIV_N_1 | e7nsuE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
E | TolB_N | e7nsuE2 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: TolB_N | ECOD (1.6) |
F | TonB_dep_Rec | e7nsuF1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: TonB_dep_Rec | ECOD (1.6) |
F | Plug | e7nsuF2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: Plug | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00267 | Gram-negative porin (Porin_1) | Gram-negative porin | - | Domain | |
PF03515 | Colicin-like bacteriocin tRNase domain (Cloacin) | Colicin-like bacteriocin tRNase domain | - | Family | |
PF11570 | Coiled-coil receptor-binding R-domain of colicin E2 (E2R135) | Coiled-coil receptor-binding R-domain of colicin E2 | - | Coiled-coil | |
PF07676 | WD40-like Beta Propeller Repeat (PD40) | WD40-like Beta Propeller Repeat | - | Repeat | |
PF00593 | TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel) | TonB dependent receptor-like, beta-barrel | This entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. | Domain | |
PF07715 | TonB-dependent Receptor Plug Domain (Plug) | TonB-dependent Receptor Plug Domain | The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Trimeric porins (n=16,S=20) | General Bacterial Porin (GBP) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Porins and Relatives | OmpF and BtuB Porin in complex with colicin E9 (colE9) |