7NSC

Substrate receptor scaffolding module of human CTLH E3 ubiquitin ligase

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00622	e7nscA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF00622	ECOD (1.6)
A	PF08513	e7nscA2	A: alpha duplicates or obligate multimers	X: Lis-homology dimerization domain (From Topology)	H: Lis-homology dimerization domain (From Topology)	T: Lis-homology dimerization domain	F: PF08513	ECOD (1.6)
D	PF09783	e7nscD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: PF09783	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00622	SPRY domain (SPRY)	SPRY domain	-	Family
A	PF08513	LisH (LisH)	LisH	The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps medi ...	The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex [1].	Domain
B [auth E]	PF00514	Armadillo/beta-catenin-like repeat (Arm)	Armadillo/beta-catenin-like repeat	-	Repeat
C [auth H]	PF10607	CTLH/CRA C-terminal to LisH motif domain (CTLH)	CTLH/CRA C-terminal to LisH motif domain	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which ...	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X messenger ribonucleoprotein 1 (FMRP), but its functional significance has yet to be determined [5]. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif [6].	Domain
C [auth H]	PF08513	LisH (LisH)	LisH	The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps medi ...	The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex [1].	Domain
D	PF09783	Vacuolar import and degradation protein (Vac_ImportDeg)	Vacuolar import and degradation protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Ran-binding protein 9	small GTPase binding protein binding binding enzyme binding GTPase binding	amyloid precursor protein catabolic process regulation of biological process organonitrogen compound metabolic process positive regulation of protein metabolic process regulation of protein metabolic process biological regulation positive regulation of biological process primary metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process metabolic process positive regulation of macromolecule metabolic process amyloid precursor protein catabolic process regulation of biological process organonitrogen compound metabolic process positive regulation of protein metabolic process regulation of protein metabolic process biological regulation positive regulation of biological process primary metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process metabolic process positive regulation of macromolecule metabolic process protein metabolic process macromolecule metabolic process positive regulation of amyloid precursor protein catabolic process amyloid precursor protein metabolic process regulation of metabolic process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of cellular process signal transduction regulation of signaling negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of ERK1 and ERK2 cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade organelle organization cytoskeleton organization protein polymerization microtubule cytoskeleton organization microtubule polymerization microtubule polymerization or depolymerization microtubule nucleation microtubule-based process supramolecular fiber organization	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex cytoskeleton intracellular non-membrane-bounded organelle microtubule associated complex microtubule cytoskeleton non-membrane-bounded organelle nuclear body ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex
B [auth E]	Isoform 2 of Armadillo repeat-containing protein 8	-	organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure tertiary granule lumen membrane-enclosed lumen intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen tertiary granule intracellular organelle organelle lumen cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure tertiary granule lumen membrane-enclosed lumen intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen tertiary granule intracellular organelle organelle lumen cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle extracellular region cytosol vesicle lumen cytoplasmic vesicle lumen secretory granule lumen specific granule lumen specific granule GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex nucleus nucleoplasm nuclear lumen
C [auth H]	Glucose-induced degradation protein 8 homolog	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell communication regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell communication signal transduction Wnt signaling pathway positive regulation of cell communication positive regulation of signal transduction regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway regulation of signal transduction positive regulation of response to stimulus positive regulation of Wnt signaling pathway positive regulation of canonical Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process	cell junction cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle cell junction cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex
D	Glucose-induced degradation protein 4 homolog	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity	organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process	protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR035782	Ran binding protein 9/10, SPRY domain	Domain
A	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
A	IPR006595	CTLH, C-terminal LisH motif	Domain
A	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
A	IPR006594	LIS1 homology motif	Conserved Site
A	IPR013144	CRA domain	Domain
A	IPR003877	SPRY domain	Domain
A	IPR001870	B30.2/SPRY domain	Domain
A	IPR050618	Ubiquitination and Signaling Pathway Regulator	Family
B [auth E]	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth E]	IPR038739	Armadillo-type fold containing protein ARMC8/Vid28	Family
B [auth E]	IPR000225	Armadillo	Repeat
B [auth E]	IPR011989	Armadillo-like helical	Homologous Superfamily
C [auth H]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
C [auth H]	IPR050618	Ubiquitination and Signaling Pathway Regulator	Family
C [auth H]	IPR006595	CTLH, C-terminal LisH motif	Domain
C [auth H]	IPR006594	LIS1 homology motif	Conserved Site
C [auth H]	IPR013144	CRA domain	Domain
D	IPR018618	Vacuolar import/degradation protein Vid24	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q96S59	breast cancer invasive ductal breast carcinoma osteosarcoma psoriasis breast carcinoma lung adenocarcinoma Pick disease schizophrenia esophageal adenocarcinoma medulloblastoma plasma cell myeloma spina bifida
B [auth E]	Pharos: Q8IUR7	tuberculosis amyotrophic lateral sclerosis breast cancer heart disease medulloblastoma osteosarcoma Pick disease rheumatoid arthritis astrocytic tumor Ciliopathies large cell medulloblastoma myocardial infarction ovarian cancer polydactyly subependymal giant cell astrocytoma tuberculosis amyotrophic lateral sclerosis breast cancer heart disease medulloblastoma osteosarcoma Pick disease rheumatoid arthritis astrocytic tumor Ciliopathies large cell medulloblastoma myocardial infarction ovarian cancer polydactyly subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor glioblastoma malignant glioma myopathy pancreatic intraductal papillary-mucinous neoplasm psoriasis
C [auth H]	Pharos: Q9NWU2	ovarian cancer pancreatic intraductal papillary-mucinous neoplasm spina bifida
D	Pharos: Q8IVV7	atypical teratoid rhabdoid tumor glioblastoma lung cancer pancreatic intraductal papillary-mucinous neoplasm autism spectrum disorder invasive ductal breast carcinoma myocardial infarction skin basal cell carcinoma ductal breast carcinoma in situ large cell medulloblastoma ovarian cancer spina bifida