7N85
Inner ring spoke from the isolated yeast NPC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 0] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090959 | 3002255 | SCOP2B (2022-06-29) |
CA [auth Y] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090959 | 3002255 | SCOP2B (2022-06-29) |
B [auth 1] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090971 | 3000456 | SCOP2B (2022-06-29) |
B [auth 1] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090960 | 3002255 | SCOP2B (2022-06-29) |
DA [auth Z] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090971 | 3000456 | SCOP2B (2022-06-29) |
DA [auth Z] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090960 | 3002255 | SCOP2B (2022-06-29) |
U [auth Q] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
V [auth R] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
W [auth S] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
X [auth T] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
AA [auth W] | SCOP2B Superfamily | RNA-binding domain RBD | 8087392 | 3000110 | SCOP2B (2022-06-29) |
Y [auth U] | SCOP2B Superfamily | RNA-binding domain RBD | 8087392 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 0] | PF08801 | e7n8502 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
A [auth 0] | PF03177 | e7n8501 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
CA [auth Y] | PF08801 | e7n85Y2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
CA [auth Y] | PF03177 | e7n85Y1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
B [auth 1] | PF08801 | e7n8512 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
B [auth 1] | PF03177 | e7n8511 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
DA [auth Z] | PF08801 | e7n85Z2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
DA [auth Z] | PF03177 | e7n85Z1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
Q [auth M] | PF11894 | e7n85M1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11894 | ECOD (1.6) |
S [auth O] | PF11894 | e7n85O1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11894 | ECOD (1.6) |
AA [auth W] | PF05172 | e7n85W1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF05172 | ECOD (1.6) |
Y [auth U] | PF05172 | e7n85U1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF05172 | ECOD (1.6) |
BA [auth X] | PF05172 | e7n85X1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF05172 | ECOD (1.6) |
Z [auth V] | PF05172 | e7n85V1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF05172 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 0], CA [auth Y] | PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Family |
A [auth 0], CA [auth Y] | PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat |
B [auth 1], DA [auth Z] | PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat |
F [auth B], I [auth E], L [auth H], O [auth K] | PF13874 | Nucleoporin complex subunit 54 (Nup54) | Nucleoporin complex subunit 54 | This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ... | Domain |
Q [auth M], S [auth O] | PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192) | Nuclear pore complex scaffold, nucleoporins 186/192/205 | - | Repeat |
R [auth N], T [auth P] | PF10487 | Nucleoporin Nup188, N-terminal (Nup188_N) | Nucleoporin Nup188, N-terminal | - | Repeat |
R [auth N], T [auth P] | PF18378 | Nuclear pore protein NUP188 C-terminal domain (Nup188_C) | Nuclear pore protein NUP188 C-terminal domain | - | Repeat |
R [auth N], T [auth P] | PF21093 | Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III) | Nucleoporin Nup188, N-terminal subdomain III | - | Repeat |
U [auth Q], V [auth R], W [auth S], X [auth T] | PF04097 | Nup93/Nic96 (Nic96) | Nup93/Nic96 | - | Repeat |
AA [auth W], Y [auth U] | PF05172 | Nup53/35/40-type RNA recognition motif (Nup35_RRM) | Nup53/35/40-type RNA recognition motif | Members of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec pro ... | Domain |
BA [auth X], Z [auth V] | PF05172 | Nup53/35/40-type RNA recognition motif (Nup35_RRM) | Nup53/35/40-type RNA recognition motif | Members of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec pro ... | Domain |