7N1I | pdb_00007n1i

CryoEM structure of Venezuelan equine encephalitis virus VLP

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth I]	Secretin_N	e7n1iI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
I [auth J]	Secretin_N	e7n1iJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
F [auth K]	Secretin_N	e7n1iK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
C [auth L]	Secretin_N	e7n1iL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
K [auth E]	AAA_lid_RFC1	e7n1iE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
H [auth F]	AAA_lid_RFC1	e7n1iF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
E [auth G]	AAA_lid_RFC1	e7n1iG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
B [auth H]	AAA_lid_RFC1	e7n1iH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
J [auth A]	Secretin_N	e7n1iA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
G [auth B]	Secretin_N	e7n1iB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
D [auth C]	Secretin_N	e7n1iC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)
A [auth D]	Secretin_N	e7n1iD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Secretin_N	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth L], F [auth K], I [auth J], L [auth I]	Capsid	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle viral membrane viral envelope
B [auth H], E [auth G], H [auth F], K [auth E]	E2 envelope glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle viral membrane viral envelope
A [auth D], D [auth C], G [auth B], J [auth A]	E1 envelope glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle viral membrane viral envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth L], F [auth K], I [auth J], L [auth I]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
C [auth L], F [auth K], I [auth J], L [auth I]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
C [auth L], F [auth K], I [auth J], L [auth I]	IPR000936	Alphavirus E2 glycoprotein	Family
C [auth L], F [auth K], I [auth J], L [auth I]	IPR000930	Peptidase S3, togavirin	Domain
C [auth L], F [auth K], I [auth J], L [auth I]	IPR002548	Alphavirus E1 glycoprotein	Domain
C [auth L], F [auth K], I [auth J], L [auth I]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
B [auth H], E [auth G], H [auth F], K [auth E]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
B [auth H], E [auth G], H [auth F], K [auth E]	IPR000936	Alphavirus E2 glycoprotein	Family
B [auth H], E [auth G], H [auth F], K [auth E]	IPR000930	Peptidase S3, togavirin	Domain
B [auth H], E [auth G], H [auth F], K [auth E]	IPR002548	Alphavirus E1 glycoprotein	Domain
B [auth H], E [auth G], H [auth F], K [auth E]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A [auth D], D [auth C], G [auth B], J [auth A]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A [auth D], D [auth C], G [auth B], J [auth A]	IPR000936	Alphavirus E2 glycoprotein	Family
A [auth D], D [auth C], G [auth B], J [auth A]	IPR000930	Peptidase S3, togavirin	Domain
A [auth D], D [auth C], G [auth B], J [auth A]	IPR002548	Alphavirus E1 glycoprotein	Domain
A [auth D], D [auth C], G [auth B], J [auth A]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily