7N0R
Structure of the SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d7n0rc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
C | d7n0rc2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d7n0rd1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d7n0rd2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | SARS coronavirus nucleoprotein RNA-binding domain-like | 8092433 | 3000498 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | SARS coronavirus nucleoprotein RNA-binding domain-like | 8092433 | 3000498 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Corona_nucleoca_1st | e7n0rA1 | A: beta complex topology | X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology) | H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology) | T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) | F: Corona_nucleoca_1st | ECOD (1.6) |
B | Corona_nucleoca_1st | e7n0rB1 | A: beta complex topology | X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology) | H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) (From Topology) | T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) | F: Corona_nucleoca_1st | ECOD (1.6) |
C | V-set_8 | e7n0rC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | V-set_8 | e7n0rD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV3 | - | nucleoprotein | SAbDab (2024-11-01) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00937 | Coronavirus nucleocapsid (CoV_nucleocap) | Coronavirus nucleocapsid | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044344 | Nucleocapsid (N) protein, C-terminal domain, coronavirus | Domain | |
IPR043505 | Nucleocapsid protein, betacoronavirus | Family | |
IPR001218 | Nucleocapsid protein, coronavirus | Family | |
IPR037195 | Nucleocapsid protein, N-terminal | Homologous Superfamily | |
IPR037179 | Nucleocapsid protein, C-terminal | Homologous Superfamily | |
IPR044345 | Nucleocapsid (N) protein, N-terminal domain, coronavirus | Domain |