7N00 | pdb_00007n00

Anaplastic lymphoma kinase (ALK) extracellular fragment of ligand binding region 648-1025 in complex with AUG-alpha

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C]	PF12810	ALK/LTK, Glycine-rich domain (ALK_LTK_GRD)	ALK/LTK, Glycine-rich domain	This entry represents the glycine-rich domain (GRD) from the Anaplastic lymphoma kinase (ALK), the closely related leukocyte tyrosine kinase (LTK) and similar proteins. ALK and LTK have been recently deorphanized receptor tyrosine kinases [1,2]. They ...	This entry represents the glycine-rich domain (GRD) from the Anaplastic lymphoma kinase (ALK), the closely related leukocyte tyrosine kinase (LTK) and similar proteins. ALK and LTK have been recently deorphanized receptor tyrosine kinases [1,2]. They are involved in neural development, cancer and autoimmune diseases. ALK activity is associated with learning and memory and controls energy expenditure, and inhibition of ALK can prevent diet-induced obesity [1,2]. This is an extracellular domain that regulates receptor activity by binding to activating peptides. This domain consists of fourteen long polyglycine type II (pGII) helices tightly packed into a honeycomb-like lattice [1,2]. This entry also includes proteins from Trichomonas vaginalis and some uncharacterised bacterial sequences.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C]	ALK tyrosine kinase receptor	molecular transducer activity catalytic activity, acting on a protein ephrin receptor activity kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups transmembrane-ephrin receptor activity protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity molecular transducer activity catalytic activity, acting on a protein ephrin receptor activity kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups transmembrane-ephrin receptor activity protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity collagen receptor activity protein tyrosine kinase collagen receptor activity GPI-linked ephrin receptor activity protein tyrosine kinase activator activity enzyme regulator activity receptor signaling protein tyrosine kinase activator activity molecular function activator activity protein kinase regulator activity kinase activator activity enzyme activator activity molecular function regulator activity protein kinase activator activity kinase regulator activity protein-hormone receptor activity insulin receptor activity histone H3Y41 kinase activity histone H3 kinase activity histone modifying activity histone kinase activity placental growth factor receptor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding platelet-derived growth factor beta-receptor activity platelet-derived growth factor receptor activity stem cell factor receptor activity brain-derived neurotrophic factor receptor activity neurotrophin receptor activity insulin-like growth factor receptor activity hepatocyte growth factor receptor activity identical protein binding protein binding boss receptor activity epidermal growth factor receptor activity macrophage colony-stimulating factor receptor activity platelet-derived growth factor alpha-receptor activity fibroblast growth factor receptor activity vascular endothelial growth factor receptor activity histone H2AXY142 kinase activity histone H2AX kinase activity heparin binding glycosaminoglycan binding sulfur compound binding	protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein modification process phosphorus metabolic process behavior multicellular organismal process locomotory behavior swimming behavior regulation of biological process regulation of cellular process regulation of apoptotic process biological regulation apoptotic process regulation of programmed cell death cell death programmed cell death response to stimulus response to environmental enrichment response to external stimulus cellular response to nitrogen compound cellular response to stimulus response to dopamine signaling cellular response to dopamine response to monoamine regulation of signal transduction regulation of dopamine receptor signaling pathway cell communication response to catecholamine cellular response to catecholamine stimulus signal transduction regulation of G protein-coupled receptor signaling pathway regulation of signaling G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus regulation of response to stimulus response to chemical regulation of cell communication G protein-coupled receptor signaling pathway positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of catabolic process lipid catabolic process catabolic process regulation of lipid metabolic process negative regulation of metabolic process negative regulation of biological process regulation of catabolic process regulation of lipid catabolic process negative regulation of cellular process negative regulation of lipid metabolic process negative regulation of lipid catabolic process lipid metabolic process developmental process head development forebrain development animal organ development brain development nervous system development pallium development multicellular organism development central nervous system development anatomical structure development telencephalon development hippocampus development limbic system development system development adult behavior response to stress multicellular organismal-level homeostasis homeostatic process energy homeostasis regulation of developmental process cellular developmental process regulation of cell differentiation generation of neurons neurogenesis neuron differentiation cell differentiation regulation of neuron differentiation cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization positive regulation of developmental process dendrite development positive regulation of neuron projection development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process plasma membrane bounded cell projection organization regulation of cell projection organization positive regulation of dendrite development regulation of dendrite development neuron development regulation of plasma membrane bounded cell projection organization cell population proliferation regulation of cell population proliferation	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex receptor complex cell periphery plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex receptor complex cell periphery plasma membrane membrane
C [auth B], D	ALK and LTK ligand 2	protein tyrosine kinase binding protein binding binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding molecular transducer activity molecular function activator activity signaling receptor activity signaling receptor activator activity molecular function regulator activity cytokine activity protein tyrosine kinase binding protein binding binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding molecular transducer activity molecular function activator activity signaling receptor activity signaling receptor activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity protein tyrosine kinase activator activity enzyme regulator activity transmembrane receptor protein tyrosine kinase activator activity catalytic activity, acting on a protein transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity kinase regulator activity kinase activity protein kinase activity transferase activity protein kinase regulator activity phosphotransferase activity, alcohol group as acceptor kinase activator activity enzyme activator activity protein kinase activator activity receptor signaling protein tyrosine kinase activator activity	regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development cellular process regulation of plasma membrane bounded cell projection organization cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling positive regulation of MAPK cascade positive regulation of ERK5 cascade positive regulation of intracellular signal transduction regulation of MAPK cascade ERK5 cascade regulation of ERK5 cascade regulation of response to stimulus MAPK cascade regulation of cell communication positive regulation of signaling positive regulation of ERK1 and ERK2 cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway	cell periphery cellular anatomical structure plasma membrane membrane extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C]	IPR008266	Tyrosine-protein kinase, active site	Active Site
A, B [auth C]	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A, B [auth C]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B [auth C]	IPR000719	Protein kinase domain	Domain
A, B [auth C]	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
A, B [auth C]	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B [auth C]	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
A, B [auth C]	IPR055163	ALK/LTK-like, glycine-rich domain	Domain
A, B [auth C]	IPR000998	MAM domain	Domain
A, B [auth C]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A, B [auth C]	IPR002011	Tyrosine-protein kinase, receptor class II, conserved site	Conserved Site
A, B [auth C]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B [auth C]	IPR050122	Receptor Tyrosine Kinase	Family
C [auth B], D	IPR029364	ALK and LTK ligand 1/2	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C]	Pharos: Q9UM73	neuroblastoma non-small cell lung carcinoma renal cell carcinoma diffuse large B-cell lymphoma inflammatory breast carcinoma anaplastic large cell lymphoma inflammatory myofibroblastic tumor papillary renal cell carcinoma pulmonary plasma cell granuloma sarcomatoid renal cell carcinoma lung cancer Neoplasm Metastasis brain cancer neuroblastoma, susceptibility to, 3 breast cancer neuroblastoma non-small cell lung carcinoma renal cell carcinoma diffuse large B-cell lymphoma inflammatory breast carcinoma anaplastic large cell lymphoma inflammatory myofibroblastic tumor papillary renal cell carcinoma pulmonary plasma cell granuloma sarcomatoid renal cell carcinoma lung cancer Neoplasm Metastasis brain cancer neuroblastoma, susceptibility to, 3 breast cancer collecting duct carcinoma chromophobe renal cell carcinoma depressive disorder rhabdomyosarcoma Sjogren syndrome squamous cell carcinoma lung adenocarcinoma adenocarcinoma mesenchymal cell neoplasm ALK-positive large B-cell lymphoma osteosarcoma cancer clear cell renal carcinoma cutaneous melanoma renal carcinoma skin disease thyroid gland papillary carcinoma melanoma ovarian cancer pituitary cancer dental caries glioma schizophrenia lymphoma ALK-positive anaplastic large cell lymphoma breast carcinoma ovarian serous adenocarcinoma
C [auth B], D	Pharos: Q6UX46	psoriasis astrocytic tumor breast cancer endometriosis invasive ductal breast carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema breast carcinoma gastric carcinoma large cell medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma psoriasis astrocytic tumor breast cancer endometriosis invasive ductal breast carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema breast carcinoma gastric carcinoma large cell medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma atypical teratoid rhabdoid tumor cystic fibrosis interstitial cystitis lung adenocarcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.