7MTD
Structure of aged SARS-CoV-2 S2P spike at pH 7.4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092473 | 3002562 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092661 | 3002615 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092471 | 3000282 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092471 | 3000282 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain D-like | 8092663 | 3002616 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092473 | 3002562 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092661 | 3002615 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092473 | 3002562 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092471 | 3000282 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092661 | 3002615 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16451 | e7mtdA2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
A | PF19209 | e7mtdA3 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
A | PF01601 | e7mtdA1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
B | PF16451 | e7mtdB2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
B | PF19209 | e7mtdB3 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
B | PF01601 | e7mtdB1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01601 | Coronavirus spike glycoprotein S2 (CoV_S2) | Coronavirus spike glycoprotein S2 | - | Family | |
PF19209 | Coronavirus spike glycoprotein S1, C-terminal (CoV_S1_C) | Coronavirus spike glycoprotein S1, C-terminal | This entry represents a domain found at the C-terminus of the Coronavirus S1 protein. It is found across a range of alpha, beta and gamma coronaviruses. This small all beta stranded domain is known as subdomain 2 in the structure of the porcine epide ... | Domain |