7MNS
Crystal Structure of the ZnF4 of Nucleoporin NUP358/RanBP2 in complex with Ran-GDP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e7mnsA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
B | zf-RanBP | e7mnsB1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-RanBP | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF00641 | Zn-finger in Ran binding protein and others (zf-RanBP) | Zn-finger in Ran binding protein and others | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR002041 | Ran GTPase | Family | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR022011 | Nup358/RanBP2 E3 ligase domain | Domain | |
IPR029000 | Cyclophilin-like domain superfamily | Homologous Superfamily | |
IPR002130 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR019734 | Tetratricopeptide repeat | Repeat | |
IPR020892 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site | Conserved Site | |
IPR036443 | Zinc finger, RanBP2-type superfamily | Homologous Superfamily | |
IPR000156 | Ran binding domain | Domain | |
IPR001876 | Zinc finger, RanBP2-type | Domain | |
IPR045255 | Ran binding protein RanBP1-like | Family |