7MMR
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Oxidized Form with Cu(I) bound
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ferritin-like | 8066780 | 3001658 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ferritin-like | 8066780 | 3001658 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ferritin-like | 8066780 | 3001658 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ferritin-like | 8066780 | 3001658 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Flavoproteins | 8097746 | 3001217 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Flavoproteins | 8097746 | 3001217 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Flavoproteins | 8097746 | 3001217 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Flavoproteins | 8097746 | 3001217 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ribonuc_red_sm | e7mmrA1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
B | Ribonuc_red_sm | e7mmrB1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
C | Ribonuc_red_sm | e7mmrC1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
D | Ribonuc_red_sm | e7mmrD1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
E | Flavodoxin_NdrI | e7mmrE1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Flavoproteins | F: Flavodoxin_NdrI | ECOD (1.6) |
F [auth G] | Flavodoxin_NdrI | e7mmrG1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Flavoproteins | F: Flavodoxin_NdrI | ECOD (1.6) |
G [auth F] | Flavodoxin_NdrI | e7mmrF1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Flavoproteins | F: Flavodoxin_NdrI | ECOD (1.6) |
H | Flavodoxin_NdrI | e7mmrH1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Flavoproteins | F: Flavodoxin_NdrI | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00268 | Ribonucleotide reductase, small chain (Ribonuc_red_sm) | Ribonucleotide reductase, small chain | - | Domain | |
E, F [auth G], G [auth F], H | PF07972 | NrdI Flavodoxin like (Flavodoxin_NdrI) | NrdI Flavodoxin like | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009078 | Ferritin-like superfamily | Homologous Superfamily | |
IPR026494 | Ribonucleoside-diphosphate reductase subunit beta | Family | |
IPR000358 | Ribonucleotide reductase small subunit family | Family | |
IPR033909 | Ribonucleotide reductase small subunit | Family | |
IPR012348 | Ribonucleotide reductase-like | Homologous Superfamily | |
E, F [auth G], G [auth F], H | IPR029039 | Flavoprotein-like superfamily | Homologous Superfamily |
E, F [auth G], G [auth F], H | IPR004465 | Ribonucleotide reductase Class Ib, NrdI | Family |
E, F [auth G], G [auth F], H | IPR020852 | Ribonucleotide reductase, class Ib, NrdI, bacterial | Family |