7MIZ | pdb_00007miz

Atomic structure of cortical microtubule from Toxoplasma gondii


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
RC [auth x]UbiD_Ne7mizx1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: UbiD_NECOD (v294.2)
QC [auth w]UbiD_Ne7mizw1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: UbiD_NECOD (v294.2)
HC [auth l]UbiD_Ne7mizl1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: UbiD_NECOD (v294.2)
GC [auth k]UbiD_Ne7mizk1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: UbiD_NECOD (v294.2)
XB [auth b]14-3-3e7mizb1 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
WB [auth a]14-3-3e7miza1 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
ZA [auth C9]14-3-3e7mizC91 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
Z [auth A3]14-3-3e7mizA31 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
XA [auth C7]14-3-3e7mizC71 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
X [auth A1]HD_4e7mizA11 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: HD_4ECOD (v294.2)
VB [auth F1]14-3-3e7mizF11 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
VA [auth C5]14-3-3e7mizC51 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
TB [auth E9]14-3-3e7mizE91 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
TA [auth C3]14-3-3e7mizC31 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
RB [auth E7]14-3-3e7mizE71 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
RA [auth C1]14-3-3e7mizC11 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
PB [auth E5]14-3-3e7mizE51 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
PA [auth B9]14-3-3e7mizB91 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
NB [auth E3]14-3-3e7mizE31 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
NA [auth B7]14-3-3e7mizB71 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
LB [auth E1]14-3-3e7mizE11 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
LA [auth B5]14-3-3e7mizB51 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
JB [auth D9]14-3-3e7mizD91 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
JA [auth B3]14-3-3e7mizB31 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
HB [auth D7]14-3-3e7mizD71 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
HA [auth B1]14-3-3e7mizB11 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
FB [auth D5]14-3-3e7mizD51 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
FA [auth A9]14-3-3e7mizA91 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
DB [auth D3]14-3-3e7mizD31 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
DA [auth A7]14-3-3e7mizA71 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
BB [auth D1]14-3-3e7mizD11 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
BA [auth A5]14-3-3e7mizA51 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
YA [auth C8]14-3-3e7mizC81 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
Y [auth A2]14-3-3e7mizA21 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
WA [auth C6]14-3-3e7mizC61 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
W [auth A0]HD_4e7mizA01 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: HD_4ECOD (v294.2)
UB [auth F0]14-3-3e7mizF01 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
UA [auth C4]14-3-3e7mizC41 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
SB [auth E8]14-3-3e7mizE81 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
SA [auth C2]14-3-3e7mizC21 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
QB [auth E6]14-3-3e7mizE61 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
QA [auth C0]14-3-3e7mizC01 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
OB [auth E4]14-3-3e7mizE41 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
OA [auth B8]14-3-3e7mizB81 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
MB [auth E2]14-3-3e7mizE21 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
MA [auth B6]14-3-3e7mizB61 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
KB [auth E0]14-3-3e7mizE01 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
KA [auth B4]14-3-3e7mizB41 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
IB [auth D8]14-3-3e7mizD81 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
IA [auth B2]14-3-3e7mizB21 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
GB [auth D6]14-3-3e7mizD61 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
GA [auth B0]14-3-3e7mizB01 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
EB [auth D4]14-3-3e7mizD41 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
EA [auth A8]14-3-3e7mizA81 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
CB [auth D2]14-3-3e7mizD21 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
CA [auth A6]14-3-3e7mizA61 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
AB [auth D0]14-3-3e7mizD01 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)
AA [auth A4]14-3-3e7mizA41 A: beta barrelsX: DNA methylase specificity domainH: BromodomainT: BromodomainF: 14-3-3ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
GC [auth k],
HC [auth l],
QC [auth w],
RC [auth x]
PDI family protein
PDI family protein
Tubulin beta chain
Tubulin alpha chain
Microtubule associated protein SPM1 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
GC [auth k],
HC [auth l],
QC [auth w],
RC [auth x]
IPR012336Thioredoxin-like foldDomain
GC [auth k],
HC [auth l],
QC [auth w],
RC [auth x]
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR012336Thioredoxin-like foldDomain
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR002453Beta tubulinFamily
IPR013838Beta tubulin, autoregulation binding siteBinding Site
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR002452Alpha tubulinFamily
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
IPR033336Stabilizer of axonemal microtubules 1/2Family