7M0R
Cryo-EM structure of the Sema3A/PlexinA4/Neuropilin 1 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Spermadhesin, CUB domain | 8079765 | 3001412 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | Spermadhesin, CUB domain | 8079765 | 3001412 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Sema domain-like | 8038490 | 3000180 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sema domain-like | 8038490 | 3000180 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | F5_F8_type_C | e7m0rE3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C | ECOD (1.6) |
A [auth E] | CUB | e7m0rE4 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: CUB | ECOD (1.6) |
C [auth F] | F5_F8_type_C | e7m0rF1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: F5_F8_type_C | ECOD (1.6) |
C [auth F] | CUB | e7m0rF3 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: CUB | ECOD (1.6) |
B [auth C] | F_UNCLASSIFIED | e7m0rC3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth C] | Sema_1 | e7m0rC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_1 | ECOD (1.6) |
B [auth C] | PSI_1 | e7m0rC2 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_1 | ECOD (1.6) |
D | F_UNCLASSIFIED | e7m0rD3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | Sema_1 | e7m0rD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_1 | ECOD (1.6) |
D | PSI_1 | e7m0rD2 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_1 | ECOD (1.6) |
E [auth A] | TIG | e7m0rA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG | ECOD (1.6) |
E [auth A] | TIG_6 | e7m0rA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG_6 | ECOD (1.6) |
E [auth A] | EUF07736 | e7m0rA5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07736 | ECOD (1.6) |
E [auth A] | TIG_3 | e7m0rA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG_3 | ECOD (1.6) |
E [auth A] | Sema_2 | e7m0rA7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_2 | ECOD (1.6) |
E [auth A] | PSI_2 | e7m0rA6 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_2 | ECOD (1.6) |
E [auth A] | PSI_3 | e7m0rA8 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_3 | ECOD (1.6) |
E [auth A] | PHD_BAZ1A_like_like,PSI | e7m0rA4 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PHD_BAZ1A_like_like,PSI | ECOD (1.6) |
F [auth B] | TIG | e7m0rB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG | ECOD (1.6) |
F [auth B] | TIG_6 | e7m0rB8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG_6 | ECOD (1.6) |
F [auth B] | EUF07736 | e7m0rB7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07736 | ECOD (1.6) |
F [auth B] | TIG_3 | e7m0rB6 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG_3 | ECOD (1.6) |
F [auth B] | Sema_2 | e7m0rB3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_2 | ECOD (1.6) |
F [auth B] | PSI_2 | e7m0rB1 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_2 | ECOD (1.6) |
F [auth B] | PSI_3 | e7m0rB5 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_3 | ECOD (1.6) |
F [auth B] | PHD_BAZ1A_like_like,PSI | e7m0rB2 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PHD_BAZ1A_like_like,PSI | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], C [auth F] | PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain |
A [auth E], C [auth F] | PF00431 | CUB domain (CUB) | CUB domain | - | Domain |
B [auth C], D | PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |
E [auth A], F [auth B] | PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family |
E [auth A], F [auth B] | PF01833 | IPT/TIG domain (TIG) | IPT/TIG domain | This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family d ... | Domain |
E [auth A], F [auth B] | PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |
E [auth A], F [auth B] | PF18020 | TIG domain found in plexin (TIG_2) | TIG domain found in plexin | This entry represents a TIG domain found in plexin proteins. TIG domains have an Ig-like fold. | Domain |
E [auth A], F [auth B] | PF17960 | TIG domain (TIG_plexin) | TIG domain | This entry represents an TIG or IPT domain (Ig domain shared by Plexins and Transcription factors) found in plexins [1]. | Domain |