7LBP

Crystal structure of human Survivin bound to histone H3T3phK4ac peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Inhibitor of apoptosis (IAP) repeat	8035906	3001510	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Inhibitor of apoptosis (IAP) repeat	8035906	3001510	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BIR	e7lbpA1	A: few secondary structure elements	X: Inhibitor of apoptosis (IAP) repeat (From Topology)	H: Inhibitor of apoptosis (IAP) repeat (From Topology)	T: Inhibitor of apoptosis (IAP) repeat	F: BIR	ECOD (1.6)
C	BIR	e7lbpC1	A: few secondary structure elements	X: Inhibitor of apoptosis (IAP) repeat (From Topology)	H: Inhibitor of apoptosis (IAP) repeat (From Topology)	T: Inhibitor of apoptosis (IAP) repeat	F: BIR	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00653	Inhibitor of Apoptosis domain (BIR)	Inhibitor of Apoptosis domain	BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, incl ...	BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin (Swiss:O15392) [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Baculoviral IAP repeat-containing protein 5	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding enzyme regulator activity molecular function inhibitor activity peptidase regulator activity cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity cysteine-type endopeptidase inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity protein-folding chaperone binding cytoskeletal protein binding microtubule binding tubulin binding identical protein binding protein heterodimerization activity protein dimerization activity cysteine-type endopeptidase inhibitor activity involved in apoptotic process cysteine-type endopeptidase regulator activity involved in apoptotic process protein homodimerization activity zinc ion binding	negative regulation of hydrolase activity regulation of cellular process negative regulation of proteolysis regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity regulation of programmed cell death negative regulation of endopeptidase activity regulation of primary metabolic process negative regulation of peptidase activity regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of proteolysis proteolysis regulation of endopeptidase activity negative regulation of cellular process negative regulation of hydrolase activity regulation of cellular process negative regulation of proteolysis regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity regulation of programmed cell death negative regulation of endopeptidase activity regulation of primary metabolic process negative regulation of peptidase activity regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of proteolysis proteolysis regulation of endopeptidase activity negative regulation of cellular process negative regulation of cysteine-type endopeptidase activity involved in apoptotic process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of cysteine-type endopeptidase activity regulation of biological process negative regulation of programmed cell death regulation of protein metabolic process regulation of apoptotic process negative regulation of metabolic process regulation of peptidase activity biological regulation negative regulation of molecular function primary metabolic process regulation of macromolecule metabolic process cell death regulation of molecular function negative regulation of apoptotic process regulation of hydrolase activity negative regulation of cysteine-type endopeptidase activity metabolic process cellular process macromolecule metabolic process apoptotic process regulation of metabolic process programmed cell death cell division cellular response to stimulus positive regulation of cell communication regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication regulation of cell cycle checkpoint negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint sister chromatid segregation positive regulation of intracellular signal transduction regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of response to stimulus positive regulation of mitotic cell cycle spindle assembly checkpoint regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic spindle checkpoint signaling regulation of mitotic cell cycle spindle assembly checkpoint spindle assembly checkpoint signaling positive regulation of biological process cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization positive regulation of response to stimulus regulation of mitotic cell cycle regulation of intracellular signal transduction mitotic sister chromatid segregation positive regulation of cell cycle process negative regulation of mitotic metaphase/anaphase transition cellular component organization or biogenesis regulation of cell cycle negative regulation of chromosome separation positive regulation of cellular process cell cycle process positive regulation of spindle checkpoint mitotic nuclear division regulation of signaling negative regulation of mitotic cell cycle phase transition organelle fission chromosome organization negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation chromosome separation negative regulation of organelle organization negative regulation of nuclear division regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle regulation of cell communication metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition positive regulation of signaling exit from mitosis positive regulation of mitotic cell cycle phase transition positive regulation of exit from mitosis positive regulation of mitotic cell cycle positive regulation of cell cycle phase transition regulation of exit from mitosis localization protein-containing complex localization protein phosphorylation phosphorylation cellular metabolic process macromolecule modification phosphate-containing compound metabolic process protein modification process phosphorus metabolic process multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus positive regulation of cell division cytoskeleton-dependent cytokinesis positive regulation of mitotic cytokinesis mitotic cytokinesis regulation of cell division regulation of mitotic cytokinesis positive regulation of cytokinesis regulation of cytokinesis cytokinesis cell cycle G2/M phase transition G2/M transition of mitotic cell cycle cellular biosynthetic process RNA metabolic process negative regulation of cellular metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of cellular metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process mitotic spindle elongation spindle midzone assembly spindle elongation non-membrane-bounded organelle assembly microtubule cytoskeleton organization cellular component biogenesis cellular component assembly microtubule cytoskeleton organization involved in mitosis spindle organization organelle assembly spindle assembly mitotic spindle organization mitotic spindle assembly microtubule-based process mitotic spindle midzone assembly cytoskeleton organization cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation positive regulation of mitotic sister chromatid separation positive regulation of chromosome separation establishment of organelle localization cellular localization chromosome localization organelle localization establishment of localization in cell establishment of chromosome localization establishment of localization regulation of localization mitotic metaphase chromosome alignment regulation of attachment of mitotic spindle microtubules to kinetochore attachment of mitotic spindle microtubules to kinetochore metaphase chromosome alignment regulation of attachment of spindle microtubules to kinetochore positive regulation of chromosome segregation attachment of spindle microtubules to kinetochore positive regulation of attachment of spindle microtubules to kinetochore positive regulation of attachment of mitotic spindle microtubules to kinetochore regulation of metaphase plate congression	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle microtubule organizing center cytoskeleton organelle intracellular non-membrane-bounded organelle interphase microtubule organizing center microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle microtubule organizing center cytoskeleton organelle intracellular non-membrane-bounded organelle interphase microtubule organizing center microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle nucleus membrane-enclosed lumen nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear lumen spindle polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex midbody centriole chromosome, centromeric region chromosomal region nucleoplasm protein-containing complex chromosome passenger complex microtubule associated complex kinetochore condensed chromosome, centromeric region condensed chromosome cytoplasmic microtubule survivin complex nuclear protein-containing complex spindle microtubule
B, D	histone H3T3phK4ac peptide	DNA binding binding organic cyclic compound binding nucleic acid binding cell adhesion molecule binding cadherin binding protein binding protein heterodimerization activity protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization biosynthetic process protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization biosynthetic process cellular biosynthetic process cellular metabolic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process organelle organization telomere organization chromosome organization regulation of cellular process regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of metabolic process	membrane cellular anatomical entity extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex membrane cellular anatomical entity extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome intracellular organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR001370	BIR repeat	Repeat
A, C	IPR051190	Baculoviral IAP repeat-containing	Family
B, D	IPR009072	Histone-fold	Homologous Superfamily
B, D	IPR007125	Histone H2A/H2B/H3	Domain
B, D	IPR000164	Histone H3/CENP-A	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: O15392	acute megakaryoblastic leukemia renal cell carcinoma breast carcinoma malignant colon neoplasm non-small cell lung carcinoma adult T-cell leukemia/lymphoma chronic myelogenous leukemia, BCR-ABL1 positive endometrial carcinoma ovarian cancer adenocarcinoma granular cell carcinoma tubular adenocarcinoma cervical cancer colorectal cancer acute promyelocytic leukemia acute megakaryoblastic leukemia renal cell carcinoma breast carcinoma malignant colon neoplasm non-small cell lung carcinoma adult T-cell leukemia/lymphoma chronic myelogenous leukemia, BCR-ABL1 positive endometrial carcinoma ovarian cancer adenocarcinoma granular cell carcinoma tubular adenocarcinoma cervical cancer colorectal cancer acute promyelocytic leukemia papillary renal cell carcinoma sarcomatoid renal cell carcinoma squamous cell carcinoma chromophobe renal cell carcinoma collecting duct carcinoma breast cancer colonic neoplasm Malignant neoplasm of ovary cribriform carcinoma of breast nasopharyngeal carcinoma gastric cancer pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor adrenal cortex carcinoma IgA glomerulonephritis atypical teratoid rhabdoid tumor small cell lung carcinoma lung cancer clear cell renal carcinoma ductal breast carcinoma in situ ovarian neoplasm gastric neoplasm hepatocellular carcinoma psoriasis invasive ductal breast carcinoma benign colon neoplasm lung adenocarcinoma cancer malignant ependymoma colorectal carcinoma malignant pancreatic neoplasm cribriform carcinoma medulloblastoma endometrial cancer osteosarcoma endometriosis pancreatic intraductal papillary-mucinous carcinoma acute T cell leukemia glioblastoma periodontitis hereditary diffuse gastric adenocarcinoma renal carcinoma atopic eczema large cell medulloblastoma small cell carcinoma lung benign neoplasm tuberculosis malignant glioma
B, D	Pharos: P68431	lung carcinoma glioblastoma glioma large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma allergic rhinitis ovarian cancer autism spectrum disorder psoriasis cutaneous lupus erythematosus tuberculosis ependymoma gastric carcinoma Glioma of Brain, Familial lung carcinoma glioblastoma glioma large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma allergic rhinitis ovarian cancer autism spectrum disorder psoriasis cutaneous lupus erythematosus tuberculosis ependymoma gastric carcinoma Glioma of Brain, Familial hypertensive disorder lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis astrocytoma (excluding glioblastoma) pancreatic intraductal papillary-mucinous carcinoma breast cancer spina bifida cystic fibrosis exocrine pancreatic carcinoma glioma susceptibility 1 invasive ductal breast carcinoma lung cancer malignant glioma medulloblastoma osteosarcoma atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous neoplasm breast carcinoma subependymoma ductal breast carcinoma in situ gastric cancer hepatocellular carcinoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D	ALY	Parent Component: LYS RESID: AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064
B, D	TPO	Parent Component: THR RESID: AA0055 , AA0038 PSI-MOD : N6-acetyl-L-lysine MOD:00064 , O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.