7KZF
High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth F] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
F [auth A] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | Late_protein_L1 | e7kzfF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
C | Late_protein_L1 | e7kzfC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
D | Late_protein_L1 | e7kzfD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
E | Late_protein_L1 | e7kzfE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
F [auth A] | Late_protein_L1 | e7kzfA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
B | Late_protein_L1 | e7kzfB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00500 | L1 (late) protein (Late_protein_L1) | L1 (late) protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036973 | Major capsid L1 (late) superfamily, Papillomavirus | Homologous Superfamily | |
IPR011222 | Double-stranded DNA virus, group I, capsid | Homologous Superfamily | |
IPR002210 | Major capsid L1 (late) protein, Papillomavirus | Family |