Crystal structure of P[6] rotavirus vp8* in complex with LNT
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D | SCOP2 Family | vp4 sialic acid binding domain | 8104012 | 4002124 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8104013 | 3000120 | SCOP2 (2022-06-29) |
| C | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8104013 | 3000120 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8104013 | 3000120 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8104013 | 3000120 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | LbH_EIF2B | e7ki5D1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (v294.2) |
| C | LbH_EIF2B | e7ki5C1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (v294.2) |
| B | LbH_EIF2B | e7ki5B1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (v294.2) |
| A | EGF_Teneurin | e7ki5A1 | A: beta barrels | X: DNA methylase specificity domain | H: Bromodomain | T: Bromodomain | F: EGF_Teneurin | ECOD (v294.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Capsid protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain | |
| IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
| IPR035330 | Rotavirus VP4, membrane interaction domain | Domain | |
| IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |














