7KC9
Ricin bound to VHH antibody V5G1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribosome inactivating proteins (RIP) | 8041968 | 3001164 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribosome inactivating proteins (RIP) | 8041968 | 3001164 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ricin B-like lectins | 8042020 | 3000678 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ricin B-like lectins | 8042019 | 3000678 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ricin B-like lectins | 8042019 | 3000678 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ricin B-like lectins | 8042020 | 3000678 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RIP | e7kc9A1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
D | RIP | e7kc9D1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
B | Ricin_B_lectin | e7kc9B2 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ricin_B_lectin | ECOD (1.6) |
E | Ricin_B_lectin | e7kc9E2 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ricin_B_lectin | ECOD (1.6) |
C | V-set_12 | e7kc9C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
F | V-set_12 | e7kc9F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | ricin chain b | ricin chain a | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00161 | Ribosome inactivating protein (RIP) | Ribosome inactivating protein | - | Domain | |
PF00652 | Ricin-type beta-trefoil lectin domain (Ricin_B_lectin) | Ricin-type beta-trefoil lectin domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily | |
IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily | |
IPR001574 | Ribosome-inactivating protein | Family | |
IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily | |
IPR017988 | Ribosome-inactivating protein conserved site | Conserved Site | |
IPR017989 | Ribosome-inactivating protein type 1/2 | Family | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR000772 | Ricin B, lectin domain | Domain | |
IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily | |
IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily | |
IPR001574 | Ribosome-inactivating protein | Family | |
IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily | |
IPR017988 | Ribosome-inactivating protein conserved site | Conserved Site | |
IPR017989 | Ribosome-inactivating protein type 1/2 | Family | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR000772 | Ricin B, lectin domain | Domain |